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High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.
Ramos RT, Carneiro AR, de Castro Soares S, Barbosa S, Varuzza L, Orabona G, Tauch A, Azevedo V, Schneider MP, Silva A. Ramos RT, et al. Among authors: carneiro ar. J Microbiol Methods. 2013 Dec;95(3):441-7. doi: 10.1016/j.mimet.2013.06.006. Epub 2013 Jun 21. J Microbiol Methods. 2013. PMID: 23792707
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.
Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A. Cerdeira LT, et al. Among authors: carneiro ar. J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18. J Microbiol Methods. 2011. PMID: 21620904 Free article.
Whole-genome sequence of Corynebacterium pseudotuberculosis PAT10 strain isolated from sheep in Patagonia, Argentina.
Cerdeira LT, Pinto AC, Schneider MP, de Almeida SS, dos Santos AR, Barbosa EG, Ali A, Barbosa MS, Carneiro AR, Ramos RT, de Oliveira RS, Barh D, Barve N, Zambare V, Belchior SE, Guimarães LC, de Castro Soares S, Dorella FA, Rocha FS, de Abreu VA, Tauch A, Trost E, Miyoshi A, Azevedo V, Silva A. Cerdeira LT, et al. Among authors: carneiro ar. J Bacteriol. 2011 Nov;193(22):6420-1. doi: 10.1128/JB.06044-11. J Bacteriol. 2011. PMID: 22038974 Free PMC article.
Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.
Ramos RT, Silva A, Carneiro AR, Pinto AC, Soares Sde C, Santos AR, Almeida SS, Guimarães LC, Aburjaile FF, Barbosa EG, Dorella FA, Rocha FS, Cerdeira LT, Barbosa MS, Tauch A, Edman J, Spier S, Miyoshi A, Schneider MP, Azevedo V. Ramos RT, et al. Among authors: carneiro ar. J Bacteriol. 2012 Dec;194(23):6620-1. doi: 10.1128/JB.01616-12. J Bacteriol. 2012. PMID: 23144380 Free PMC article.
Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.
Silva A, Schneider MP, Cerdeira L, Barbosa MS, Ramos RT, Carneiro AR, Santos R, Lima M, D'Afonseca V, Almeida SS, Santos AR, Soares SC, Pinto AC, Ali A, Dorella FA, Rocha F, de Abreu VA, Trost E, Tauch A, Shpigel N, Miyoshi A, Azevedo V. Silva A, et al. Among authors: carneiro ar. J Bacteriol. 2011 Jan;193(1):323-4. doi: 10.1128/JB.01211-10. Epub 2010 Oct 29. J Bacteriol. 2011. PMID: 21037006 Free PMC article.
Complete genome sequence of Corynebacterium pseudotuberculosis strain Cp267, isolated from a llama.
Lopes T, Silva A, Thiago R, Carneiro A, Dorella FA, Rocha FS, dos Santos AR, Lima AR, Guimarães LC, Barbosa EG, Ribeiro D, Fiaux KK, Diniz CA, de Abreu VA, de Almeida SS, Hassan SS, Ali A, Bakhtiar SM, Aburjaile FF, Pinto AC, Soares Sde C, Pereira Ude P, Schneider MP, Miyoshi A, Edman J, Spier S, Azevedo V. Lopes T, et al. Among authors: carneiro a. J Bacteriol. 2012 Jul;194(13):3567-8. doi: 10.1128/JB.00461-12. J Bacteriol. 2012. PMID: 22689248 Free PMC article.
The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome.
Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V. Santos AR, et al. Among authors: carneiro a. BMC Genomics. 2012;13 Suppl 5(Suppl 5):S6. doi: 10.1186/1471-2164-13-S5-S6. Epub 2012 Oct 19. BMC Genomics. 2012. PMID: 23095951 Free PMC article.
The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.
Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EG, Dorella FA, Aburjaile F, Rocha FS, Nascimento KK, Guimarães LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VA, Schneider MP, Miyoshi A, Tauch A, Azevedo V. Soares SC, et al. Among authors: carneiro a. PLoS One. 2013;8(1):e53818. doi: 10.1371/journal.pone.0053818. Epub 2013 Jan 14. PLoS One. 2013. PMID: 23342011 Free PMC article.
64 results