Hirata A - Search Results

1

The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.

Ochi A, Makabe K, Yamagami R, Hirata A, Sakaguchi R, Hou YM, Watanabe K, Nureki O, Kuwajima K, Hori H. Ochi A, et al. Among authors: hirata a. J Biol Chem. 2013 Aug 30;288(35):25562-25574. doi: 10.1074/jbc.M113.485128. Epub 2013 Jul 18. J Biol Chem. 2013. PMID: 23867454 Free PMC article.

2

Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase.

Nishimasu H, Ishitani R, Yamashita K, Iwashita C, Hirata A, Hori H, Nureki O. Nishimasu H, et al. Among authors: hirata a. Proc Natl Acad Sci U S A. 2009 May 19;106(20):8180-5. doi: 10.1073/pnas.0901330106. Epub 2009 May 5. Proc Natl Acad Sci U S A. 2009. PMID: 19416846 Free PMC article.

3

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus.

Ishida K, Kunibayashi T, Tomikawa C, Ochi A, Kanai T, Hirata A, Iwashita C, Hori H. Ishida K, et al. Among authors: hirata a. Nucleic Acids Res. 2011 Mar;39(6):2304-18. doi: 10.1093/nar/gkq1180. Epub 2010 Nov 18. Nucleic Acids Res. 2011. PMID: 21097467 Free PMC article.

4

Substrate tRNA recognition mechanism of a multisite-specific tRNA methyltransferase, Aquifex aeolicus Trm1, based on the X-ray crystal structure.

Awai T, Ochi A, Ihsanawati, Sengoku T, Hirata A, Bessho Y, Yokoyama S, Hori H. Awai T, et al. Among authors: hirata a. J Biol Chem. 2011 Oct 7;286(40):35236-46. doi: 10.1074/jbc.M111.253641. Epub 2011 Aug 15. J Biol Chem. 2011. PMID: 21844194 Free PMC article.

5

Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop.

Hirata A, Kitajima T, Hori H. Hirata A, et al. Nucleic Acids Res. 2011 Nov;39(21):9376-89. doi: 10.1093/nar/gkr615. Epub 2011 Aug 16. Nucleic Acids Res. 2011. PMID: 21846775 Free PMC article.

6

X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.

Hirata A, Fujishima K, Yamagami R, Kawamura T, Banfield JF, Kanai A, Hori H. Hirata A, et al. Nucleic Acids Res. 2012 Nov 1;40(20):10554-66. doi: 10.1093/nar/gks826. Epub 2012 Aug 31. Nucleic Acids Res. 2012. PMID: 22941657 Free PMC article.

7

The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO).

Yamagami R, Yamashita K, Nishimasu H, Tomikawa C, Ochi A, Iwashita C, Hirata A, Ishitani R, Nureki O, Hori H. Yamagami R, et al. Among authors: hirata a. J Biol Chem. 2012 Dec 14;287(51):42480-94. doi: 10.1074/jbc.M112.390112. Epub 2012 Oct 24. J Biol Chem. 2012. PMID: 23095745 Free PMC article.

8

Substrate tRNA recognition mechanism of eubacterial tRNA (m1A58) methyltransferase (TrmI).

Takuma H, Ushio N, Minoji M, Kazayama A, Shigi N, Hirata A, Tomikawa C, Ochi A, Hori H. Takuma H, et al. Among authors: hirata a. J Biol Chem. 2015 Feb 27;290(9):5912-25. doi: 10.1074/jbc.M114.606038. Epub 2015 Jan 15. J Biol Chem. 2015. PMID: 25593312 Free PMC article.

9

In vitro dihydrouridine formation by tRNA dihydrouridine synthase from Thermus thermophilus, an extreme-thermophilic eubacterium.

Kusuba H, Yoshida T, Iwasaki E, Awai T, Kazayama A, Hirata A, Tomikawa C, Yamagami R, Hori H. Kusuba H, et al. Among authors: hirata a. J Biochem. 2015 Dec;158(6):513-21. doi: 10.1093/jb/mvv066. Epub 2015 Jun 24. J Biochem. 2015. PMID: 26112661

10

Multisite-specific archaeosine tRNA-guanine transglycosylase (ArcTGT) from Thermoplasma acidophilum, a thermo-acidophilic archaeon.

Kawamura T, Hirata A, Ohno S, Nomura Y, Nagano T, Nameki N, Yokogawa T, Hori H. Kawamura T, et al. Among authors: hirata a. Nucleic Acids Res. 2016 Feb 29;44(4):1894-908. doi: 10.1093/nar/gkv1522. Epub 2015 Dec 31. Nucleic Acids Res. 2016. PMID: 26721388 Free PMC article.

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