Watkins A - Search Results

1

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design.

Drew K, Renfrew PD, Craven TW, Butterfoss GL, Chou FC, Lyskov S, Bullock BN, Watkins A, Labonte JW, Pacella M, Kilambi KP, Leaver-Fay A, Kuhlman B, Gray JJ, Bradley P, Kirshenbaum K, Arora PS, Das R, Bonneau R. Drew K, et al. Among authors: watkins a. PLoS One. 2013 Jul 15;8(7):e67051. doi: 10.1371/journal.pone.0067051. Print 2013. PLoS One. 2013. PMID: 23869206 Free PMC article.

2

HippDB: a database of readily targeted helical protein-protein interactions.

Bergey CM, Watkins AM, Arora PS. Bergey CM, et al. Bioinformatics. 2013 Nov 1;29(21):2806-7. doi: 10.1093/bioinformatics/btt483. Epub 2013 Aug 19. Bioinformatics. 2013. PMID: 23958730 Free PMC article.

3

Effects of side chains in helix nucleation differ from helix propagation.

Miller SE, Watkins AM, Kallenbach NR, Arora PS. Miller SE, et al. Proc Natl Acad Sci U S A. 2014 May 6;111(18):6636-41. doi: 10.1073/pnas.1322833111. Epub 2014 Apr 21. Proc Natl Acad Sci U S A. 2014. PMID: 24753597 Free PMC article.

4

Anatomy of β-strands at protein-protein interfaces.

Watkins AM, Arora PS. Watkins AM, et al. ACS Chem Biol. 2014 Aug 15;9(8):1747-54. doi: 10.1021/cb500241y. Epub 2014 Jun 9. ACS Chem Biol. 2014. PMID: 24870802 Free PMC article.

5

Structure-based inhibition of protein-protein interactions.

Watkins AM, Arora PS. Watkins AM, et al. Eur J Med Chem. 2015 Apr 13;94:480-8. doi: 10.1016/j.ejmech.2014.09.047. Epub 2014 Sep 16. Eur J Med Chem. 2015. PMID: 25253637 Free PMC article. Review.

6

Protein-Protein Interactions Mediated by Helical Tertiary Structure Motifs.

Watkins AM, Wuo MG, Arora PS. Watkins AM, et al. J Am Chem Soc. 2015 Sep 16;137(36):11622-30. doi: 10.1021/jacs.5b05527. Epub 2015 Sep 4. J Am Chem Soc. 2015. PMID: 26302018 Free PMC article.

7

Side-Chain Conformational Preferences Govern Protein-Protein Interactions.

Watkins AM, Bonneau R, Arora PS. Watkins AM, et al. J Am Chem Soc. 2016 Aug 24;138(33):10386-9. doi: 10.1021/jacs.6b04892. Epub 2016 Aug 9. J Am Chem Soc. 2016. PMID: 27483190 Free PMC article.

8

Accurate de novo design of hyperstable constrained peptides.

Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, Linsky TW, Watkins A, Rettie SA, Xu X, Carter LP, Bonneau R, Olson JM, Coutsias E, Correnti CE, Szyperski T, Craik DJ, Baker D. Bhardwaj G, et al. Among authors: watkins a. Nature. 2016 Oct 20;538(7625):329-335. doi: 10.1038/nature19791. Epub 2016 Sep 14. Nature. 2016. PMID: 27626386 Free PMC article.

9

Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions.

Watkins AM, Bonneau R, Arora PS. Watkins AM, et al. Methods Mol Biol. 2017;1561:291-307. doi: 10.1007/978-1-4939-6798-8_17. Methods Mol Biol. 2017. PMID: 28236245

10

Protein Domain Mimics as Modulators of Protein-Protein Interactions.

Sawyer N, Watkins AM, Arora PS. Sawyer N, et al. Acc Chem Res. 2017 Jun 20;50(6):1313-1322. doi: 10.1021/acs.accounts.7b00130. Epub 2017 May 31. Acc Chem Res. 2017. PMID: 28561588 Free PMC article. Review.

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