DeSalle R - Search Results

1

Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.

Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, Ooi LC, Ooi SE, Chan KL, Halim MA, Azizi N, Nagappan J, Bacher B, Lakey N, Smith SW, He D, Hogan M, Budiman MA, Lee EK, DeSalle R, Kudrna D, Goicoechea JL, Wing RA, Wilson RK, Fulton RS, Ordway JM, Martienssen RA, Sambanthamurthi R. Singh R, et al. Among authors: desalle r. Nature. 2013 Aug 15;500(7462):335-9. doi: 10.1038/nature12309. Epub 2013 Jul 24. Nature. 2013. PMID: 23883927 Free PMC article.

2

Using whole genome presence/absence data to untangle function in 12 Drosophila genomes.

Rosenfeld JA, DeSalle R, Lee EK, O'Grady P. Rosenfeld JA, et al. Among authors: desalle r. Fly (Austin). 2008 Nov-Dec;2(6):291-9. doi: 10.4161/fly.7481. Epub 2008 Nov 24. Fly (Austin). 2008. PMID: 19139635 Free article.

3

A whole-genome phylogeny of the family Pasteurellaceae.

Bonaventura MP, Lee EK, Desalle R, Planet PJ. Bonaventura MP, et al. Among authors: desalle r. Mol Phylogenet Evol. 2010 Mar;54(3):950-6. doi: 10.1016/j.ympev.2009.08.010. Epub 2009 Aug 15. Mol Phylogenet Evol. 2010. PMID: 19686857

4

A functional phylogenomic view of the seed plants.

Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R. Lee EK, et al. Among authors: desalle r. PLoS Genet. 2011 Dec;7(12):e1002411. doi: 10.1371/journal.pgen.1002411. Epub 2011 Dec 15. PLoS Genet. 2011. PMID: 22194700 Free PMC article.

5

The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.

de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R. de la Torre-Bárcena JE, et al. Among authors: desalle r. PLoS One. 2009 Jun 2;4(6):e5764. doi: 10.1371/journal.pone.0005764. PLoS One. 2009. PMID: 19503618 Free PMC article.

6

Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.

Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R. Cibrián-Jaramillo A, et al. Among authors: desalle r. Genome Biol Evol. 2010 Jul 12;2:225-39. doi: 10.1093/gbe/evq012. Genome Biol Evol. 2010. PMID: 20624728 Free PMC article.

7

A global reference for human genetic variation.

1000 Genomes Project Consortium; Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO, Marchini JL, McCarthy S, McVean GA, Abecasis GR. 1000 Genomes Project Consortium, et al. Nature. 2015 Oct 1;526(7571):68-74. doi: 10.1038/nature15393. Nature. 2015. PMID: 26432245 Free PMC article.

8

OrthologID: automation of genome-scale ortholog identification within a parsimony framework.

Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R. Chiu JC, et al. Among authors: desalle r. Bioinformatics. 2006 Mar 15;22(6):699-707. doi: 10.1093/bioinformatics/btk040. Epub 2006 Jan 12. Bioinformatics. 2006. PMID: 16410324

9

Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.

Sarkar IN, Egan MG, Coruzzi G, Lee EK, DeSalle R. Sarkar IN, et al. Among authors: desalle r. BMC Bioinformatics. 2008 Feb 19;9:103. doi: 10.1186/1471-2105-9-103. BMC Bioinformatics. 2008. PMID: 18282301 Free PMC article.

10

Gene orthology assessment with OrthologID.

Egan M, Lee EK, Chiu JC, Coruzzi G, Desalle R. Egan M, et al. Among authors: desalle r. Methods Mol Biol. 2009;537:23-38. doi: 10.1007/978-1-59745-251-9_2. Methods Mol Biol. 2009. PMID: 19378138

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