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A strategy for integrative computational physiology.
Hunter P, Nielsen P. Hunter P, et al. Among authors: nielsen p. Physiology (Bethesda). 2005 Oct;20:316-25. doi: 10.1152/physiol.00022.2005. Physiology (Bethesda). 2005. PMID: 16174871 Free article. Review.
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project.
Bradley C, Bowery A, Britten R, Budelmann V, Camara O, Christie R, Cookson A, Frangi AF, Gamage TB, Heidlauf T, Krittian S, Ladd D, Little C, Mithraratne K, Nash M, Nickerson D, Nielsen P, Nordbø O, Omholt S, Pashaei A, Paterson D, Rajagopal V, Reeve A, Röhrle O, Safaei S, Sebastián R, Steghöfer M, Wu T, Yu T, Zhang H, Hunter P. Bradley C, et al. Among authors: nielsen p. Prog Biophys Mol Biol. 2011 Oct;107(1):32-47. doi: 10.1016/j.pbiomolbio.2011.06.015. Epub 2011 Jul 7. Prog Biophys Mol Biol. 2011. PMID: 21762717
The CellML Model Repository.
Lloyd CM, Lawson JR, Hunter PJ, Nielsen PF. Lloyd CM, et al. Bioinformatics. 2008 Sep 15;24(18):2122-3. doi: 10.1093/bioinformatics/btn390. Epub 2008 Jul 25. Bioinformatics. 2008. PMID: 18658182
An overview of the CellML API and its implementation.
Miller AK, Marsh J, Reeve A, Garny A, Britten R, Halstead M, Cooper J, Nickerson DP, Nielsen PF. Miller AK, et al. Among authors: nielsen pf. BMC Bioinformatics. 2010 Apr 8;11:178. doi: 10.1186/1471-2105-11-178. BMC Bioinformatics. 2010. PMID: 20377909 Free PMC article.
Toward a curated CellML model repository.
Nickerson D, Stevens C, Halstead M, Hunter P, Nielsen P. Nickerson D, et al. Among authors: nielsen p. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:4237-40. doi: 10.1109/IEMBS.2006.260202. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17947072
Computational physiology and the Physiome Project.
Crampin EJ, Halstead M, Hunter P, Nielsen P, Noble D, Smith N, Tawhai M. Crampin EJ, et al. Among authors: nielsen p. Exp Physiol. 2004 Jan;89(1):1-26. doi: 10.1113/expphysiol.2003.026740. Exp Physiol. 2004. PMID: 15109205 Free article. Review.
Minimum Information About a Simulation Experiment (MIASE).
Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, Laibe C, Miller AK, Moraru I, Nickerson D, Nielsen P, Nikolski M, Sahle S, Sauro HM, Schmidt H, Snoep JL, Tolle D, Wolkenhauer O, Le Novère N. Waltemath D, et al. Among authors: nielsen p. PLoS Comput Biol. 2011 Apr;7(4):e1001122. doi: 10.1371/journal.pcbi.1001122. Epub 2011 Apr 28. PLoS Comput Biol. 2011. PMID: 21552546 Free PMC article. No abstract available.
A method for visualizing CellML models.
Wimalaratne SM, Halstead MD, Lloyd CM, Cooling MT, Crampin EJ, Nielsen PF. Wimalaratne SM, et al. Among authors: nielsen pf. Bioinformatics. 2009 Nov 15;25(22):3012-9. doi: 10.1093/bioinformatics/btp495. Epub 2009 Aug 24. Bioinformatics. 2009. PMID: 19703920
Biophysical annotation and representation of CellML models.
Wimalaratne SM, Halstead MD, Lloyd CM, Crampin EJ, Nielsen PF. Wimalaratne SM, et al. Among authors: nielsen pf. Bioinformatics. 2009 Sep 1;25(17):2263-70. doi: 10.1093/bioinformatics/btp391. Epub 2009 Jun 29. Bioinformatics. 2009. PMID: 19564239
2,599 results