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Defining the limits of homology modeling in information-driven protein docking.
Rodrigues JP, Melquiond AS, Karaca E, Trellet M, van Dijk M, van Zundert GC, Schmitz C, de Vries SJ, Bordogna A, Bonati L, Kastritis PL, Bonvin AM. Rodrigues JP, et al. Among authors: schmitz c. Proteins. 2013 Dec;81(12):2119-28. doi: 10.1002/prot.24382. Epub 2013 Oct 17. Proteins. 2013. PMID: 23913867 Free article.
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.
van Zundert GCP, Rodrigues JPGLM, Trellet M, Schmitz C, Kastritis PL, Karaca E, Melquiond ASJ, van Dijk M, de Vries SJ, Bonvin AMJJ. van Zundert GCP, et al. Among authors: schmitz c. J Mol Biol. 2016 Feb 22;428(4):720-725. doi: 10.1016/j.jmb.2015.09.014. Epub 2015 Sep 26. J Mol Biol. 2016. PMID: 26410586 Free article.
Clustering biomolecular complexes by residue contacts similarity.
Rodrigues JP, Trellet M, Schmitz C, Kastritis P, Karaca E, Melquiond AS, Bonvin AM. Rodrigues JP, et al. Among authors: schmitz c. Proteins. 2012 Jul;80(7):1810-7. doi: 10.1002/prot.24078. Epub 2012 May 8. Proteins. 2012. PMID: 22489062
Blind prediction of interfacial water positions in CAPRI.
Lensink MF, Moal IH, Bates PA, Kastritis PL, Melquiond AS, Karaca E, Schmitz C, van Dijk M, Bonvin AM, Eisenstein M, Jiménez-García B, Grosdidier S, Solernou A, Pérez-Cano L, Pallara C, Fernández-Recio J, Xu J, Muthu P, Praneeth Kilambi K, Gray JJ, Grudinin S, Derevyanko G, Mitchell JC, Wieting J, Kanamori E, Tsuchiya Y, Murakami Y, Sarmiento J, Standley DM, Shirota M, Kinoshita K, Nakamura H, Chavent M, Ritchie DW, Park H, Ko J, Lee H, Seok C, Shen Y, Kozakov D, Vajda S, Kundrotas PJ, Vakser IA, Pierce BG, Hwang H, Vreven T, Weng Z, Buch I, Farkash E, Wolfson HJ, Zacharias M, Qin S, Zhou HX, Huang SY, Zou X, Wojdyla JA, Kleanthous C, Wodak SJ. Lensink MF, et al. Among authors: schmitz c. Proteins. 2014 Apr;82(4):620-32. doi: 10.1002/prot.24439. Epub 2013 Nov 23. Proteins. 2014. PMID: 24155158 Free PMC article.
796 results