Sudbery IM - Search Results

1

Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy.

Rajan P, Sudbery IM, Villasevil ME, Mui E, Fleming J, Davis M, Ahmad I, Edwards J, Sansom OJ, Sims D, Ponting CP, Heger A, McMenemin RM, Pedley ID, Leung HY. Rajan P, et al. Among authors: sudbery im. Eur Urol. 2014 Jul;66(1):32-9. doi: 10.1016/j.eururo.2013.08.011. Epub 2013 Aug 14. Eur Urol. 2014. PMID: 24054872 Free PMC article.

2

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer.

Rajan P, Stockley J, Sudbery IM, Fleming JT, Hedley A, Kalna G, Sims D, Ponting CP, Heger A, Robson CN, McMenemin RM, Pedley ID, Leung HY. Rajan P, et al. Among authors: sudbery im. BMC Cancer. 2014 Dec 18;14:977. doi: 10.1186/1471-2407-14-977. BMC Cancer. 2014. PMID: 25519703 Free PMC article.

3

Sequencing depth and coverage: key considerations in genomic analyses.

Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP. Sims D, et al. Nat Rev Genet. 2014 Feb;15(2):121-32. doi: 10.1038/nrg3642. Nat Rev Genet. 2014. PMID: 24434847 Review.

4

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy.

Smith T, Heger A, Sudbery I. Smith T, et al. Genome Res. 2017 Mar;27(3):491-499. doi: 10.1101/gr.209601.116. Epub 2017 Jan 18. Genome Res. 2017. PMID: 28100584 Free PMC article.

5

CGAT: computational genomics analysis toolkit.

Sims D, Ilott NE, Sansom SN, Sudbery IM, Johnson JS, Fawcett KA, Berlanga-Taylor AJ, Luna-Valero S, Ponting CP, Heger A. Sims D, et al. Among authors: sudbery im. Bioinformatics. 2014 May 1;30(9):1290-1. doi: 10.1093/bioinformatics/btt756. Epub 2014 Jan 5. Bioinformatics. 2014. PMID: 24395753 Free PMC article.

6

KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands.

Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ. Farcas AM, et al. Elife. 2012 Dec 18;1:e00205. doi: 10.7554/eLife.00205. Elife. 2012. PMID: 23256043 Free PMC article.

7

Co-transcriptional Loading of RNA Export Factors Shapes the Human Transcriptome.

Viphakone N, Sudbery I, Griffith L, Heath CG, Sims D, Wilson SA. Viphakone N, et al. Mol Cell. 2019 Jul 25;75(2):310-323.e8. doi: 10.1016/j.molcel.2019.04.034. Epub 2019 May 16. Mol Cell. 2019. PMID: 31104896 Free PMC article.

8

Next-generation sequencing of vertebrate experimental organisms.

Turner DJ, Keane TM, Sudbery I, Adams DJ. Turner DJ, et al. Mamm Genome. 2009 Jun;20(6):327-38. doi: 10.1007/s00335-009-9187-4. Epub 2009 May 19. Mamm Genome. 2009. PMID: 19452216 Free PMC article. Review.

9

Chromatin-based, in cis and in trans regulatory rewiring underpins distinct oncogenic transcriptomes in multiple myeloma.

Alvarez-Benayas J, Trasanidis N, Katsarou A, Ponnusamy K, Chaidos A, May PC, Xiao X, Bua M, Atta M, Roberts IAG, Auner HW, Hatjiharissi E, Papaioannou M, Caputo VS, Sudbery IM, Karadimitris A. Alvarez-Benayas J, et al. Among authors: sudbery im. Nat Commun. 2021 Sep 14;12(1):5450. doi: 10.1038/s41467-021-25704-2. Nat Commun. 2021. PMID: 34521827 Free PMC article.

10

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data.

Srivastava A, Malik L, Smith T, Sudbery I, Patro R. Srivastava A, et al. Genome Biol. 2019 Mar 27;20(1):65. doi: 10.1186/s13059-019-1670-y. Genome Biol. 2019. PMID: 30917859 Free PMC article.

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