Heringa J - Search Results

1

HIV-1 envelope glycoprotein signatures that correlate with the development of cross-reactive neutralizing activity.

van den Kerkhof TL, Feenstra KA, Euler Z, van Gils MJ, Rijsdijk LW, Boeser-Nunnink BD, Heringa J, Schuitemaker H, Sanders RW. van den Kerkhof TL, et al. Among authors: heringa j. Retrovirology. 2013 Sep 23;10:102. doi: 10.1186/1742-4690-10-102. Retrovirology. 2013. PMID: 24059682 Free PMC article.

2

Applying federated learning to combat food fraud in food supply chains.

Gavai A, Bouzembrak Y, Mu W, Martin F, Kaliyaperumal R, van Soest J, Choudhury A, Heringa J, Dekker A, Marvin HJP. Gavai A, et al. Among authors: heringa j. NPJ Sci Food. 2023 Sep 1;7(1):46. doi: 10.1038/s41538-023-00220-3. NPJ Sci Food. 2023. PMID: 37658060 Free PMC article.

3

Sequence comparison by sequence harmony identifies subtype-specific functional sites.

Pirovano W, Feenstra KA, Heringa J. Pirovano W, et al. Among authors: heringa j. Nucleic Acids Res. 2006;34(22):6540-8. doi: 10.1093/nar/gkl901. Epub 2006 Nov 27. Nucleic Acids Res. 2006. PMID: 17130172 Free PMC article.

4

Sequence harmony: detecting functional specificity from alignments.

Feenstra KA, Pirovano W, Krab K, Heringa J. Feenstra KA, et al. Among authors: heringa j. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W495-8. doi: 10.1093/nar/gkm406. Epub 2007 Jun 21. Nucleic Acids Res. 2007. PMID: 17584793 Free PMC article.

5

Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.

Ye K, Feenstra KA, Heringa J, Ijzerman AP, Marchiori E. Ye K, et al. Among authors: heringa j. Bioinformatics. 2008 Jan 1;24(1):18-25. doi: 10.1093/bioinformatics/btm537. Epub 2007 Nov 17. Bioinformatics. 2008. PMID: 18024975

6

PRALINETM: a strategy for improved multiple alignment of transmembrane proteins.

Pirovano W, Feenstra KA, Heringa J. Pirovano W, et al. Among authors: heringa j. Bioinformatics. 2008 Feb 15;24(4):492-7. doi: 10.1093/bioinformatics/btm636. Epub 2008 Jan 2. Bioinformatics. 2008. PMID: 18174178

7

On defining the dynamics of hydrophobic patches on protein surfaces.

Lijnzaad P, Feenstra KA, Heringa J, Holstege FC. Lijnzaad P, et al. Among authors: heringa j. Proteins. 2008 Jul;72(1):105-14. doi: 10.1002/prot.21924. Proteins. 2008. PMID: 18186474

8

The meaning of alignment: lessons from structural diversity.

Pirovano W, Feenstra KA, Heringa J. Pirovano W, et al. Among authors: heringa j. BMC Bioinformatics. 2008 Dec 23;9:556. doi: 10.1186/1471-2105-9-556. BMC Bioinformatics. 2008. PMID: 19105835 Free PMC article.

9

Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.

Bonzanni N, Krepska E, Feenstra KA, Fokkink W, Kielmann T, Bal H, Heringa J. Bonzanni N, et al. Among authors: heringa j. Bioinformatics. 2009 Aug 15;25(16):2049-56. doi: 10.1093/bioinformatics/btp355. Epub 2009 Jun 10. Bioinformatics. 2009. PMID: 19515963

10

Multi-Harmony: detecting functional specificity from sequence alignment.

Brandt BW, Feenstra KA, Heringa J. Brandt BW, et al. Among authors: heringa j. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W35-40. doi: 10.1093/nar/gkq415. Epub 2010 Jun 4. Nucleic Acids Res. 2010. PMID: 20525785 Free PMC article.

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