Sun H - Search Results

1

BSeQC: quality control of bisulfite sequencing experiments.

Lin X, Sun D, Rodriguez B, Zhao Q, Sun H, Zhang Y, Li W. Lin X, et al. Among authors: sun d, sun h. Bioinformatics. 2013 Dec 15;29(24):3227-9. doi: 10.1093/bioinformatics/btt548. Epub 2013 Sep 23. Bioinformatics. 2013. PMID: 24064417 Free PMC article.

2

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS. Sun H, et al. Bioinformatics. 2013 May 15;29(10):1352-4. doi: 10.1093/bioinformatics/btt135. Epub 2013 Mar 18. Bioinformatics. 2013. PMID: 23508969 Free PMC article.

3

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Qin Q, Mei S, Wu Q, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW, Liu XS. Qin Q, et al. Among authors: sun h. BMC Bioinformatics. 2016 Oct 3;17(1):404. doi: 10.1186/s12859-016-1274-4. BMC Bioinformatics. 2016. PMID: 27716038 Free PMC article.

4

Target analysis by integration of transcriptome and ChIP-seq data with BETA.

Wang S, Sun H, Ma J, Zang C, Wang C, Wang J, Tang Q, Meyer CA, Zhang Y, Liu XS. Wang S, et al. Among authors: sun h. Nat Protoc. 2013 Dec;8(12):2502-15. doi: 10.1038/nprot.2013.150. Epub 2013 Nov 21. Nat Protoc. 2013. PMID: 24263090 Free PMC article.

5

CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse.

Wang Q, Huang J, Sun H, Liu J, Wang J, Wang Q, Qin Q, Mei S, Zhao C, Yang X, Liu XS, Zhang Y. Wang Q, et al. Among authors: sun h. Nucleic Acids Res. 2014 Jan;42(Database issue):D450-8. doi: 10.1093/nar/gkt1151. Epub 2013 Nov 18. Nucleic Acids Res. 2014. PMID: 24253304 Free PMC article.

6

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.

Cornwell M, Vangala M, Taing L, Herbert Z, Köster J, Li B, Sun H, Li T, Zhang J, Qiu X, Pun M, Jeselsohn R, Brown M, Liu XS, Long HW. Cornwell M, et al. Among authors: sun h. BMC Bioinformatics. 2018 Apr 12;19(1):135. doi: 10.1186/s12859-018-2139-9. BMC Bioinformatics. 2018. PMID: 29649993 Free PMC article.

7

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Mei S, Qin Q, Wu Q, Sun H, Zheng R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA, Liu XS. Mei S, et al. Among authors: sun h. Nucleic Acids Res. 2017 Jan 4;45(D1):D658-D662. doi: 10.1093/nar/gkw983. Epub 2016 Oct 26. Nucleic Acids Res. 2017. PMID: 27789702 Free PMC article.

8

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.

Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS. Qin Q, et al. Among authors: sun h. Genome Biol. 2020 Feb 7;21(1):32. doi: 10.1186/s13059-020-1934-6. Genome Biol. 2020. PMID: 32033573 Free PMC article.

9

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS. Zheng R, et al. Among authors: sun h. Nucleic Acids Res. 2019 Jan 8;47(D1):D729-D735. doi: 10.1093/nar/gky1094. Nucleic Acids Res. 2019. PMID: 30462313 Free PMC article.

10

Solvent-modulated preparation of lead-free Cs₃Bi₂I₉polycrystalline film for high-performance photodetectors.

Song Y, Zhang H, Liu M, Wan Y, Sun H, Cao Y. Song Y, et al. Among authors: sun h. Nanotechnology. 2025 Jan 24. doi: 10.1088/1361-6528/adae16. Online ahead of print. Nanotechnology. 2025. PMID: 39854773

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