Zhang Y - Search Results

1

BSeQC: quality control of bisulfite sequencing experiments.

Lin X, Sun D, Rodriguez B, Zhao Q, Sun H, Zhang Y, Li W. Lin X, et al. Among authors: zhang y. Bioinformatics. 2013 Dec 15;29(24):3227-9. doi: 10.1093/bioinformatics/btt548. Epub 2013 Sep 23. Bioinformatics. 2013. PMID: 24064417 Free PMC article.

2

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M. Lupien M, et al. Among authors: zhang y. Cell. 2008 Mar 21;132(6):958-70. doi: 10.1016/j.cell.2008.01.018. Cell. 2008. PMID: 18358809 Free PMC article.

3

Model-based analysis of ChIP-Seq (MACS).

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Zhang Y, et al. Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17. Genome Biol. 2008. PMID: 18798982 Free PMC article.

4

Epigenome sequencing comes of age in development, differentiation and disease mechanism research.

Zhao Q, Zhang Y. Zhao Q, et al. Among authors: zhang y. Epigenomics. 2011 Apr;3(2):207-20. doi: 10.2217/epi.10.78. Epigenomics. 2011. PMID: 22122282 Review.

5

Computational inference of mRNA stability from histone modification and transcriptome profiles.

Wang C, Tian R, Zhao Q, Xu H, Meyer CA, Li C, Zhang Y, Liu XS. Wang C, et al. Among authors: zhang y. Nucleic Acids Res. 2012 Aug;40(14):6414-23. doi: 10.1093/nar/gks304. Epub 2012 Apr 10. Nucleic Acids Res. 2012. PMID: 22495509 Free PMC article.

6

CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.

Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, Wang S, Chen J, Shen L, Duan X, Hu S, Li W, Long H, Zhang Y, Liu XS. Qin B, et al. Among authors: zhang y. Bioinformatics. 2012 May 15;28(10):1411-2. doi: 10.1093/bioinformatics/bts157. Epub 2012 Apr 11. Bioinformatics. 2012. PMID: 22495751 Free PMC article.

7

DiNuP: a systematic approach to identify regions of differential nucleosome positioning.

Fu K, Tang Q, Feng J, Liu XS, Zhang Y. Fu K, et al. Among authors: zhang y. Bioinformatics. 2012 Aug 1;28(15):1965-71. doi: 10.1093/bioinformatics/bts329. Epub 2012 Jun 4. Bioinformatics. 2012. PMID: 22668788 Free PMC article.

8

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Feng J, Meyer CA, Wang Q, Liu JS, Shirley Liu X, Zhang Y. Feng J, et al. Among authors: zhang y. Bioinformatics. 2012 Nov 1;28(21):2782-8. doi: 10.1093/bioinformatics/bts515. Epub 2012 Aug 24. Bioinformatics. 2012. PMID: 22923299

9

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS. Sun H, et al. Among authors: zhang y. Bioinformatics. 2013 May 15;29(10):1352-4. doi: 10.1093/bioinformatics/btt135. Epub 2013 Mar 18. Bioinformatics. 2013. PMID: 23508969 Free PMC article.

10

CR Cistrome: a ChIP-Seq database for chromatin regulators and histone modification linkages in human and mouse.

Wang Q, Huang J, Sun H, Liu J, Wang J, Wang Q, Qin Q, Mei S, Zhao C, Yang X, Liu XS, Zhang Y. Wang Q, et al. Among authors: zhang y. Nucleic Acids Res. 2014 Jan;42(Database issue):D450-8. doi: 10.1093/nar/gkt1151. Epub 2013 Nov 18. Nucleic Acids Res. 2014. PMID: 24253304 Free PMC article.

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