Babu M - Search Results

1

A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities.

Vizeacoumar FJ, Arnold R, Vizeacoumar FS, Chandrashekhar M, Buzina A, Young JT, Kwan JH, Sayad A, Mero P, Lawo S, Tanaka H, Brown KR, Baryshnikova A, Mak AB, Fedyshyn Y, Wang Y, Brito GC, Kasimer D, Makhnevych T, Ketela T, Datti A, Babu M, Emili A, Pelletier L, Wrana J, Wainberg Z, Kim PM, Rottapel R, O'Brien CA, Andrews B, Boone C, Moffat J. Vizeacoumar FJ, et al. Among authors: babu m. Mol Syst Biol. 2013 Oct 8;9:696. doi: 10.1038/msb.2013.54. Mol Syst Biol. 2013. PMID: 24104479 Free PMC article.

2

eSGA: E. coli synthetic genetic array analysis.

Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A. Butland G, et al. Among authors: babu m. Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239. Nat Methods. 2008. PMID: 18677321

3

Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.

Díaz-Mejía JJ, Babu M, Emili A. Díaz-Mejía JJ, et al. Among authors: babu m. FEMS Microbiol Rev. 2009 Jan;33(1):66-97. doi: 10.1111/j.1574-6976.2008.00141.x. Epub 2008 Nov 27. FEMS Microbiol Rev. 2009. PMID: 19054114 Free PMC article. Review.

4

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.

Hu P, Janga SC, Babu M, Díaz-Mejía JJ, Butland G, Yang W, Pogoutse O, Guo X, Phanse S, Wong P, Chandran S, Christopoulos C, Nazarians-Armavil A, Nasseri NK, Musso G, Ali M, Nazemof N, Eroukova V, Golshani A, Paccanaro A, Greenblatt JF, Moreno-Hagelsieb G, Emili A. Hu P, et al. Among authors: babu m. PLoS Biol. 2009 Apr 28;7(4):e96. doi: 10.1371/journal.pbio.1000096. PLoS Biol. 2009. PMID: 19402753 Free PMC article.

5

Systematic characterization of the protein interaction network and protein complexes in Saccharomyces cerevisiae using tandem affinity purification and mass spectrometry.

Babu M, Krogan NJ, Awrey DE, Emili A, Greenblatt JF. Babu M, et al. Methods Mol Biol. 2009;548:187-207. doi: 10.1007/978-1-59745-540-4_11. Methods Mol Biol. 2009. PMID: 19521826

6

Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli.

Babu M, Butland G, Pogoutse O, Li J, Greenblatt JF, Emili A. Babu M, et al. Methods Mol Biol. 2009;564:373-400. doi: 10.1007/978-1-60761-157-8_22. Methods Mol Biol. 2009. PMID: 19544035

7

Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes.

Babu M, Musso G, Díaz-Mejía JJ, Butland G, Greenblatt JF, Emili A. Babu M, et al. Mol Biosyst. 2009 Dec;5(12):1439-55. doi: 10.1039/B907407d. Epub 2009 Jul 31. Mol Biosyst. 2009. PMID: 19763343 Review.

8

Structure of a SLC26 anion transporter STAS domain in complex with acyl carrier protein: implications for E. coli YchM in fatty acid metabolism.

Babu M, Greenblatt JF, Emili A, Strynadka NC, Reithmeier RA, Moraes TF. Babu M, et al. Structure. 2010 Nov 10;18(11):1450-62. doi: 10.1016/j.str.2010.08.015. Structure. 2010. PMID: 21070944 Free article.

9

A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair.

Babu M, Beloglazova N, Flick R, Graham C, Skarina T, Nocek B, Gagarinova A, Pogoutse O, Brown G, Binkowski A, Phanse S, Joachimiak A, Koonin EV, Savchenko A, Emili A, Greenblatt J, Edwards AM, Yakunin AF. Babu M, et al. Mol Microbiol. 2011 Jan;79(2):484-502. doi: 10.1111/j.1365-2958.2010.07465.x. Epub 2010 Dec 7. Mol Microbiol. 2011. PMID: 21219465 Free PMC article.

10

Ribosome-dependent ATPase interacts with conserved membrane protein in Escherichia coli to modulate protein synthesis and oxidative phosphorylation.

Babu M, Aoki H, Chowdhury WQ, Gagarinova A, Graham C, Phanse S, Laliberte B, Sunba N, Jessulat M, Golshani A, Emili A, Greenblatt JF, Ganoza MC. Babu M, et al. PLoS One. 2011 Apr 27;6(4):e18510. doi: 10.1371/journal.pone.0018510. PLoS One. 2011. PMID: 21556145 Free PMC article.

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