Arenas M - Search Results

1

Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation.

Lopes JS, Arenas M, Posada D, Beaumont MA. Lopes JS, et al. Among authors: arenas m. Heredity (Edinb). 2014 Mar;112(3):255-64. doi: 10.1038/hdy.2013.101. Epub 2013 Oct 23. Heredity (Edinb). 2014. PMID: 24149652 Free PMC article.

2

Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography.

Arenas M, Posada D. Arenas M, et al. BMC Bioinformatics. 2007 Nov 20;8:458. doi: 10.1186/1471-2105-8-458. BMC Bioinformatics. 2007. PMID: 18028540 Free PMC article.

3

Characterization of reticulate networks based on the coalescent with recombination.

Arenas M, Valiente G, Posada D. Arenas M, et al. Mol Biol Evol. 2008 Dec;25(12):2517-20. doi: 10.1093/molbev/msn219. Epub 2008 Oct 15. Mol Biol Evol. 2008. PMID: 18927089 Free PMC article.

4

Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial.

Pérez-Losada M, Posada D, Arenas M, Jobes DV, Sinangil F, Berman PW, Crandall KA. Pérez-Losada M, et al. Among authors: arenas m. Retrovirology. 2009 Jul 15;6:67. doi: 10.1186/1742-4690-6-67. Retrovirology. 2009. PMID: 19604405 Free PMC article.

5

Coalescent simulation of intracodon recombination.

Arenas M, Posada D. Arenas M, et al. Genetics. 2010 Feb;184(2):429-37. doi: 10.1534/genetics.109.109736. Epub 2009 Nov 23. Genetics. 2010. PMID: 19933876 Free PMC article.

6

The effect of recombination on the reconstruction of ancestral sequences.

Arenas M, Posada D. Arenas M, et al. Genetics. 2010 Apr;184(4):1133-9. doi: 10.1534/genetics.109.113423. Epub 2010 Feb 1. Genetics. 2010. PMID: 20124027 Free PMC article.

7

Characterization of phylogenetic networks with NetTest.

Arenas M, Patricio M, Posada D, Valiente G. Arenas M, et al. BMC Bioinformatics. 2010 May 20;11:268. doi: 10.1186/1471-2105-11-268. BMC Bioinformatics. 2010. PMID: 20487540 Free PMC article.

8

Computational design of centralized HIV-1 genes.

Arenas M, Posada D. Arenas M, et al. Curr HIV Res. 2010 Dec;8(8):613-21. doi: 10.2174/157016210794088263. Curr HIV Res. 2010. PMID: 21054255 Review.

9

Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand.

Pérez-Losada M, Jobes DV, Sinangil F, Crandall KA, Arenas M, Posada D, Berman PW. Pérez-Losada M, et al. Among authors: arenas m. PLoS One. 2011 Mar 10;6(3):e16902. doi: 10.1371/journal.pone.0016902. PLoS One. 2011. PMID: 21423744 Free PMC article.

10

Protein evolution along phylogenetic histories under structurally constrained substitution models.

Arenas M, Dos Santos HG, Posada D, Bastolla U. Arenas M, et al. Bioinformatics. 2013 Dec 1;29(23):3020-8. doi: 10.1093/bioinformatics/btt530. Epub 2013 Sep 12. Bioinformatics. 2013. PMID: 24037213 Free PMC article.

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