Crovella ME - Search Results

1

Going the distance for protein function prediction: a new distance metric for protein interaction networks.

Cao M, Zhang H, Park J, Daniels NM, Crovella ME, Cowen LJ, Hescott B. Cao M, et al. Among authors: crovella me. PLoS One. 2013 Oct 23;8(10):e76339. doi: 10.1371/journal.pone.0076339. eCollection 2013. PLoS One. 2013. PMID: 24194834 Free PMC article.

2

Functional protein representations from biological networks enable diverse cross-species inference.

Fan J, Cannistra A, Fried I, Lim T, Schaffner T, Crovella M, Hescott B, Leiserson MDM. Fan J, et al. Nucleic Acids Res. 2019 May 21;47(9):e51. doi: 10.1093/nar/gkz132. Nucleic Acids Res. 2019. PMID: 30847485 Free PMC article.

3

One for all and all for One: Improving replication of genetic studies through network diffusion.

Lancour D, Naj A, Mayeux R, Haines JL, Pericak-Vance MA, Schellenberg GD, Crovella M, Farrer LA, Kasif S. Lancour D, et al. PLoS Genet. 2018 Apr 23;14(4):e1007306. doi: 10.1371/journal.pgen.1007306. eCollection 2018 Apr. PLoS Genet. 2018. PMID: 29684019 Free PMC article.

4

Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2.

Law JN, Akers K, Tasnina N, Santina CMD, Deutsch S, Kshirsagar M, Klein-Seetharaman J, Crovella M, Rajagopalan P, Kasif S, Murali TM. Law JN, et al. Gigascience. 2021 Dec 29;10(12):giab082. doi: 10.1093/gigascience/giab082. Gigascience. 2021. PMID: 34966926 Free PMC article.

5

Matrix (factorization) reloaded: flexible methods for imputing genetic interactions with cross-species and side information.

Fan J, Li XC, Crovella M, Leiserson MDM. Fan J, et al. Bioinformatics. 2020 Dec 30;36(Suppl_2):i866-i874. doi: 10.1093/bioinformatics/btaa818. Bioinformatics. 2020. PMID: 33381837

6

Single-cell transcriptional networks in differentiating preadipocytes suggest drivers associated with tissue heterogeneity.

Ramirez AK, Dankel SN, Rastegarpanah B, Cai W, Xue R, Crovella M, Tseng YH, Kahn CR, Kasif S. Ramirez AK, et al. Nat Commun. 2020 Apr 30;11(1):2117. doi: 10.1038/s41467-020-16019-9. Nat Commun. 2020. PMID: 32355218 Free PMC article.

7

Analysis of brain region-specific co-expression networks reveals clustering of established and novel genes associated with Alzheimer disease.

Lancour D, Dupuis J, Mayeux R, Haines JL, Pericak-Vance MA, Schellenberg GC, Crovella M, Farrer LA, Kasif S. Lancour D, et al. Alzheimers Res Ther. 2020 Sep 2;12(1):103. doi: 10.1186/s13195-020-00674-7. Alzheimers Res Ther. 2020. PMID: 32878640 Free PMC article.

8

State-of-the-art computational methods to predict protein-protein interactions with high accuracy and coverage.

Kewalramani N, Emili A, Crovella M. Kewalramani N, et al. Proteomics. 2023 Nov;23(21-22):e2200292. doi: 10.1002/pmic.202200292. Epub 2023 Jul 3. Proteomics. 2023. PMID: 37401192 Review.

9

Frog embryos use multiple levels of temporal pattern in risk assessment for vibration-cued escape hatching.

Jung J, Guo M, Crovella ME, McDaniel JG, Warkentin KM. Jung J, et al. Among authors: crovella me. Anim Cogn. 2022 Dec;25(6):1527-1544. doi: 10.1007/s10071-022-01634-4. Epub 2022 Jun 6. Anim Cogn. 2022. PMID: 35668245

10

Dynamic remodeling of Escherichia coli interactome in response to environmental perturbations.

Youssef A, Bian F, Paniikov NS, Crovella M, Emili A. Youssef A, et al. Proteomics. 2023 Nov;23(21-22):e2200404. doi: 10.1002/pmic.202200404. Epub 2023 May 30. Proteomics. 2023. PMID: 37248827

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