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Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England.
Wong TH, Dearlove BL, Hedge J, Giess AP, Piazza P, Trebes A, Paul J, Smit E, Smith EG, Sutton JK, Wilcox MH, Dingle KE, Peto TE, Crook DW, Wilson DJ, Wyllie DH. Wong TH, et al. Among authors: smith eg. Virol J. 2013 Nov 13;10:335. doi: 10.1186/1743-422X-10-335. Virol J. 2013. PMID: 24220146 Free PMC article.
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.
Walker TM, Ip CL, Harrell RH, Evans JT, Kapatai G, Dedicoat MJ, Eyre DW, Wilson DJ, Hawkey PM, Crook DW, Parkhill J, Harris D, Walker AS, Bowden R, Monk P, Smith EG, Peto TE. Walker TM, et al. Among authors: smith eg. Lancet Infect Dis. 2013 Feb;13(2):137-46. doi: 10.1016/S1473-3099(12)70277-3. Epub 2012 Nov 15. Lancet Infect Dis. 2013. PMID: 23158499 Free PMC article.
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study.
Walker TM, Kohl TA, Omar SV, Hedge J, Del Ojo Elias C, Bradley P, Iqbal Z, Feuerriegel S, Niehaus KE, Wilson DJ, Clifton DA, Kapatai G, Ip CLC, Bowden R, Drobniewski FA, Allix-Béguec C, Gaudin C, Parkhill J, Diel R, Supply P, Crook DW, Smith EG, Walker AS, Ismail N, Niemann S, Peto TEA; Modernizing Medical Microbiology (MMM) Informatics Group. Walker TM, et al. Among authors: smith eg. Lancet Infect Dis. 2015 Oct;15(10):1193-1202. doi: 10.1016/S1473-3099(15)00062-6. Epub 2015 Jun 23. Lancet Infect Dis. 2015. PMID: 26116186 Free PMC article.
Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study.
Pankhurst LJ, Del Ojo Elias C, Votintseva AA, Walker TM, Cole K, Davies J, Fermont JM, Gascoyne-Binzi DM, Kohl TA, Kong C, Lemaitre N, Niemann S, Paul J, Rogers TR, Roycroft E, Smith EG, Supply P, Tang P, Wilcox MH, Wordsworth S, Wyllie D, Xu L, Crook DW; COMPASS-TB Study Group. Pankhurst LJ, et al. Among authors: smith eg. Lancet Respir Med. 2016 Jan;4(1):49-58. doi: 10.1016/S2213-2600(15)00466-X. Epub 2015 Dec 4. Lancet Respir Med. 2016. PMID: 26669893 Free PMC article.
Same-Day Diagnostic and Surveillance Data for Tuberculosis via Whole-Genome Sequencing of Direct Respiratory Samples.
Votintseva AA, Bradley P, Pankhurst L, Del Ojo Elias C, Loose M, Nilgiriwala K, Chatterjee A, Smith EG, Sanderson N, Walker TM, Morgan MR, Wyllie DH, Walker AS, Peto TEA, Crook DW, Iqbal Z. Votintseva AA, et al. Among authors: smith eg. J Clin Microbiol. 2017 May;55(5):1285-1298. doi: 10.1128/JCM.02483-16. Epub 2017 Mar 8. J Clin Microbiol. 2017. PMID: 28275074 Free PMC article.
Tuberculosis is changing.
Walker TM, Cruz ALG, Peto TE, Smith EG, Esmail H, Crook DW. Walker TM, et al. Among authors: smith eg. Lancet Infect Dis. 2017 Apr;17(4):359-361. doi: 10.1016/S1473-3099(17)30123-8. Epub 2017 Mar 13. Lancet Infect Dis. 2017. PMID: 28298254 No abstract available.
Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Performance against Line Probe Assays and Phenotyping.
Quan TP, Bawa Z, Foster D, Walker T, Del Ojo Elias C, Rathod P; MMM Informatics Group; Iqbal Z, Bradley P, Mowbray J, Walker AS, Crook DW, Wyllie DH, Peto TEA, Smith EG. Quan TP, et al. Among authors: smith eg. J Clin Microbiol. 2018 Jan 24;56(2):e01480-17. doi: 10.1128/JCM.01480-17. Print 2018 Feb. J Clin Microbiol. 2018. PMID: 29167290 Free PMC article.
219 results