Novichkov P - Search Results

1

Network portal: a database for storage, analysis and visualization of biological networks.

Turkarslan S, Wurtmann EJ, Wu WJ, Jiang N, Bare JC, Foley K, Reiss DJ, Novichkov P, Baliga NS. Turkarslan S, et al. Among authors: novichkov p. Nucleic Acids Res. 2014 Jan;42(Database issue):D184-90. doi: 10.1093/nar/gkt1190. Epub 2013 Nov 23. Nucleic Acids Res. 2014. PMID: 24271392 Free PMC article.

2

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Novichkov PS, Laikova ON, Novichkova ES, Gelfand MS, Arkin AP, Dubchak I, Rodionov DA. Novichkov PS, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D111-8. doi: 10.1093/nar/gkp894. Epub 2009 Nov 1. Nucleic Acids Res. 2010. PMID: 19884135 Free PMC article.

3

MicrobesOnline: an integrated portal for comparative and functional genomics.

Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. Dehal PS, et al. Among authors: novichkov ps. Nucleic Acids Res. 2010 Jan;38(Database issue):D396-400. doi: 10.1093/nar/gkp919. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906701 Free PMC article.

4

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.

Novichkov PS, Brettin TS, Novichkova ES, Dehal PS, Arkin AP, Dubchak I, Rodionov DA. Novichkov PS, et al. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W604-8. doi: 10.1093/nar/gks562. Epub 2012 Jun 14. Nucleic Acids Res. 2012. PMID: 22700702 Free PMC article.

5

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I. Novichkov PS, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11. Nucleic Acids Res. 2010. PMID: 20542910 Free PMC article.

6

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.

Novichkov PS, Ratnere I, Wolf YI, Koonin EV, Dubchak I. Novichkov PS, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D448-54. doi: 10.1093/nar/gkn684. Epub 2008 Oct 9. Nucleic Acids Res. 2009. PMID: 18845571 Free PMC article.

7

RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria.

Novichkov PS, Kazakov AE, Ravcheev DA, Leyn SA, Kovaleva GY, Sutormin RA, Kazanov MD, Riehl W, Arkin AP, Dubchak I, Rodionov DA. Novichkov PS, et al. BMC Genomics. 2013 Nov 1;14:745. doi: 10.1186/1471-2164-14-745. BMC Genomics. 2013. PMID: 24175918 Free PMC article.

8

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes.

Kazakov AE, Cipriano MJ, Novichkov PS, Minovitsky S, Vinogradov DV, Arkin A, Mironov AA, Gelfand MS, Dubchak I. Kazakov AE, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D407-12. doi: 10.1093/nar/gkl865. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142223 Free PMC article.

9

VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies.

Lukashin I, Novichkov P, Boffelli D, Paciorkowski AR, Minovitsky S, Yang S, Dubchak I. Lukashin I, et al. Among authors: novichkov p. Bioinformatics. 2011 Sep 15;27(18):2595-7. doi: 10.1093/bioinformatics/btr440. Epub 2011 Jul 26. Bioinformatics. 2011. PMID: 21791533 Free PMC article.

10

σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough.

Kazakov AE, Rajeev L, Chen A, Luning EG, Dubchak I, Mukhopadhyay A, Novichkov PS. Kazakov AE, et al. BMC Genomics. 2015 Nov 10;16:919. doi: 10.1186/s12864-015-2176-y. BMC Genomics. 2015. PMID: 26555820 Free PMC article.

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