van Breukelen B - Search Results

1

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

Low TY, van Heesch S, van den Toorn H, Giansanti P, Cristobal A, Toonen P, Schafer S, Hübner N, van Breukelen B, Mohammed S, Cuppen E, Heck AJ, Guryev V. Low TY, et al. Among authors: van den toorn h, van heesch s, van breukelen b. Cell Rep. 2013 Dec 12;5(5):1469-78. doi: 10.1016/j.celrep.2013.10.041. Epub 2013 Nov 27. Cell Rep. 2013. PMID: 24290761 Free article.

2

Analysis of the cGMP/cAMP interactome using a chemical proteomics approach in mammalian heart tissue validates sphingosine kinase type 1-interacting protein as a genuine and highly abundant AKAP.

Scholten A, Poh MK, van Veen TA, van Breukelen B, Vos MA, Heck AJ. Scholten A, et al. Among authors: van breukelen b, van veen ta. J Proteome Res. 2006 Jun;5(6):1435-47. doi: 10.1021/pr0600529. J Proteome Res. 2006. PMID: 16739995

3

Resolving stoichiometries and oligomeric states of glutamate synthase protein complexes with curve fitting and simulation of electrospray mass spectra.

van Breukelen B, Barendregt A, Heck AJ, van den Heuvel RH. van Breukelen B, et al. Among authors: van den heuvel rh. Rapid Commun Mass Spectrom. 2006;20(16):2490-6. doi: 10.1002/rcm.2620. Rapid Commun Mass Spectrom. 2006. PMID: 16862623

4

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

de Groot MJL, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EAF, Reinders MJT, Pronk JT, Heck AJR, Slijper M. de Groot MJL, et al. Among authors: van breukelen b. Microbiology (Reading). 2007 Nov;153(Pt 11):3864-3878. doi: 10.1099/mic.0.2007/009969-0. Microbiology (Reading). 2007. PMID: 17975095 Free article.

5

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

Pinkse MW, Mohammed S, Gouw JW, van Breukelen B, Vos HR, Heck AJ. Pinkse MW, et al. Among authors: van breukelen b. J Proteome Res. 2008 Feb;7(2):687-97. doi: 10.1021/pr700605z. Epub 2007 Nov 23. J Proteome Res. 2008. PMID: 18034456

6

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.

Lemeer S, Pinkse MW, Mohammed S, van Breukelen B, den Hertog J, Slijper M, Heck AJ. Lemeer S, et al. Among authors: van breukelen b. J Proteome Res. 2008 Apr;7(4):1555-64. doi: 10.1021/pr700667w. Epub 2008 Feb 29. J Proteome Res. 2008. PMID: 18307296

7

Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites.

Mohammed S, Lorenzen K, Kerkhoven R, van Breukelen B, Vannini A, Cramer P, Heck AJ. Mohammed S, et al. Among authors: van breukelen b. Anal Chem. 2008 May 15;80(10):3584-92. doi: 10.1021/ac7024283. Epub 2008 Apr 17. Anal Chem. 2008. PMID: 18416563

8

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes.

Boekhorst J, van Breukelen B, Heck A Jr, Snel B. Boekhorst J, et al. Among authors: van breukelen b. Genome Biol. 2008 Oct 1;9(10):R144. doi: 10.1186/gb-2008-9-10-r144. Genome Biol. 2008. PMID: 18828897 Free PMC article.

9

A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing.

Gauci S, van Breukelen B, Lemeer SM, Krijgsveld J, Heck AJ. Gauci S, et al. Among authors: van breukelen b. Proteomics. 2008 Dec;8(23-24):4898-906. doi: 10.1002/pmic.200800295. Proteomics. 2008. PMID: 19003858

10

StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry.

van Breukelen B, van den Toorn HW, Drugan MM, Heck AJ. van Breukelen B, et al. Among authors: van den toorn hw. Bioinformatics. 2009 Jun 1;25(11):1472-3. doi: 10.1093/bioinformatics/btp181. Epub 2009 Mar 31. Bioinformatics. 2009. PMID: 19336442

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