Aebersold R - Search Results

1

Lysine-specific chemical cross-linking of protein complexes and identification of cross-linking sites using LC-MS/MS and the xQuest/xProphet software pipeline.

Leitner A, Walzthoeni T, Aebersold R. Leitner A, et al. Among authors: aebersold r. Nat Protoc. 2014 Jan;9(1):120-37. doi: 10.1038/nprot.2013.168. Epub 2013 Dec 19. Nat Protoc. 2014. PMID: 24356771

2

Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software.

Pedrioli PG, Raught B, Zhang XD, Rogers R, Aitchison J, Matunis M, Aebersold R. Pedrioli PG, et al. Among authors: aebersold r. Nat Methods. 2006 Jul;3(7):533-9. doi: 10.1038/nmeth891. Nat Methods. 2006. PMID: 16791211

3

Reproducible isolation of distinct, overlapping segments of the phosphoproteome.

Bodenmiller B, Mueller LN, Mueller M, Domon B, Aebersold R. Bodenmiller B, et al. Among authors: aebersold r. Nat Methods. 2007 Mar;4(3):231-7. doi: 10.1038/nmeth1005. Epub 2007 Feb 11. Nat Methods. 2007. PMID: 17293869

4

Development and validation of a spectral library searching method for peptide identification from MS/MS.

Lam H, Deutsch EW, Eddes JS, Eng JK, King N, Stein SE, Aebersold R. Lam H, et al. Among authors: aebersold r. Proteomics. 2007 Mar;7(5):655-67. doi: 10.1002/pmic.200600625. Proteomics. 2007. PMID: 17295354

5

An integrated mass spectrometric and computational framework for the analysis of protein interaction networks.

Rinner O, Mueller LN, Hubálek M, Müller M, Gstaiger M, Aebersold R. Rinner O, et al. Among authors: aebersold r. Nat Biotechnol. 2007 Mar;25(3):345-52. doi: 10.1038/nbt1289. Epub 2007 Feb 25. Nat Biotechnol. 2007. PMID: 17322870

6

Solid-phase extraction of N-linked glycopeptides.

Tian Y, Zhou Y, Elliott S, Aebersold R, Zhang H. Tian Y, et al. Among authors: aebersold r. Nat Protoc. 2007;2(2):334-9. doi: 10.1038/nprot.2007.42. Nat Protoc. 2007. PMID: 17406594 Free PMC article.

7

The minimum information about a proteomics experiment (MIAPE).

Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H. Taylor CF, et al. Among authors: aebersold r. Nat Biotechnol. 2007 Aug;25(8):887-93. doi: 10.1038/nbt1329. Nat Biotechnol. 2007. PMID: 17687369 Review.

8

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.

Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. Klimek J, et al. Among authors: aebersold r. J Proteome Res. 2008 Jan;7(1):96-103. doi: 10.1021/pr070244j. Epub 2007 Aug 21. J Proteome Res. 2008. PMID: 17711323 Free PMC article.

9

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M. Mueller LN, et al. Among authors: aebersold r. Proteomics. 2007 Oct;7(19):3470-80. doi: 10.1002/pmic.200700057. Proteomics. 2007. PMID: 17726677

10

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.

Mueller LN, Brusniak MY, Mani DR, Aebersold R. Mueller LN, et al. Among authors: aebersold r. J Proteome Res. 2008 Jan;7(1):51-61. doi: 10.1021/pr700758r. Epub 2008 Jan 4. J Proteome Res. 2008. PMID: 18173218 Review.

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