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MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.
Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M. Umemura M, et al. Among authors: koike h. PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013. PLoS One. 2013. PMID: 24391870 Free PMC article.
Transcriptional regulation of genes on the non-syntenic blocks of Aspergillus oryzae and its functional relationship to solid-state cultivation.
Tamano K, Sano M, Yamane N, Terabayashi Y, Toda T, Sunagawa M, Koike H, Hatamoto O, Umitsuki G, Takahashi T, Koyama Y, Asai R, Abe K, Machida M. Tamano K, et al. Among authors: koike h. Fungal Genet Biol. 2008 Feb;45(2):139-51. doi: 10.1016/j.fgb.2007.09.005. Epub 2007 Sep 25. Fungal Genet Biol. 2008. PMID: 17967552
Identification and characterization of genes responsible for biosynthesis of kojic acid, an industrially important compound from Aspergillus oryzae.
Terabayashi Y, Sano M, Yamane N, Marui J, Tamano K, Sagara J, Dohmoto M, Oda K, Ohshima E, Tachibana K, Higa Y, Ohashi S, Koike H, Machida M. Terabayashi Y, et al. Among authors: koike h. Fungal Genet Biol. 2010 Dec;47(12):953-61. doi: 10.1016/j.fgb.2010.08.014. Epub 2010 Sep 16. Fungal Genet Biol. 2010. PMID: 20849972
1,249 results