Nagano N - Search Results

1

MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.

Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M. Umemura M, et al. Among authors: nagano n. PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013. PLoS One. 2013. PMID: 24391870 Free PMC article.

2

Class of cyclic ribosomal peptide synthetic genes in filamentous fungi.

Nagano N, Umemura M, Izumikawa M, Kawano J, Ishii T, Kikuchi M, Tomii K, Kumagai T, Yoshimi A, Machida M, Abe K, Shin-Ya K, Asai K. Nagano N, et al. Fungal Genet Biol. 2016 Jan;86:58-70. doi: 10.1016/j.fgb.2015.12.010. Epub 2015 Dec 15. Fungal Genet Biol. 2016. PMID: 26703898 Free article.

3

Expression of ustR and the Golgi protease KexB are required for ustiloxin B biosynthesis in Aspergillus oryzae.

Yoshimi A, Umemura M, Nagano N, Koike H, Machida M, Abe K. Yoshimi A, et al. Among authors: nagano n. AMB Express. 2016 Mar;6(1):9. doi: 10.1186/s13568-016-0181-4. Epub 2016 Feb 3. AMB Express. 2016. PMID: 26842395 Free PMC article.

4

Unveiling the Biosynthetic Pathway of the Ribosomally Synthesized and Post-translationally Modified Peptide Ustiloxin B in Filamentous Fungi.

Ye Y, Minami A, Igarashi Y, Izumikawa M, Umemura M, Nagano N, Machida M, Kawahara T, Shin-Ya K, Gomi K, Oikawa H. Ye Y, et al. Among authors: nagano n. Angew Chem Int Ed Engl. 2016 Jul 4;55(28):8072-5. doi: 10.1002/anie.201602611. Epub 2016 May 11. Angew Chem Int Ed Engl. 2016. PMID: 27166860 Free article.

5

Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus.

Umemura M, Nagano N, Koike H, Kawano J, Ishii T, Miyamura Y, Kikuchi M, Tamano K, Yu J, Shin-ya K, Machida M. Umemura M, et al. Among authors: nagano n. Fungal Genet Biol. 2014 Jul;68:23-30. doi: 10.1016/j.fgb.2014.04.011. Epub 2014 May 16. Fungal Genet Biol. 2014. PMID: 24841822 Free article.

6

Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens.

Tsukui T, Nagano N, Umemura M, Kumagai T, Terai G, Machida M, Asai K. Tsukui T, et al. Among authors: nagano n. Bioinformatics. 2015 Apr 1;31(7):981-5. doi: 10.1093/bioinformatics/btu753. Epub 2014 Nov 19. Bioinformatics. 2015. PMID: 25414363

7

Prediction of detailed enzyme functions and identification of specificity determining residues by random forests.

Nagao C, Nagano N, Mizuguchi K. Nagao C, et al. Among authors: nagano n. PLoS One. 2014 Jan 8;9(1):e84623. doi: 10.1371/journal.pone.0084623. eCollection 2014. PLoS One. 2014. PMID: 24416252 Free PMC article.

8

EzCatDB: the enzyme reaction database, 2015 update.

Nagano N, Nakayama N, Ikeda K, Fukuie M, Yokota K, Doi T, Kato T, Tomii K. Nagano N, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D453-8. doi: 10.1093/nar/gku946. Epub 2014 Oct 16. Nucleic Acids Res. 2015. PMID: 25324316 Free PMC article.

9

Relationships between functional subclasses and information contained in active-site and ligand-binding residues in diverse superfamilies.

Nagao C, Nagano N, Mizuguchi K. Nagao C, et al. Among authors: nagano n. Proteins. 2010 Aug 1;78(10):2369-84. doi: 10.1002/prot.22750. Proteins. 2010. PMID: 20544971

10

Metric learning for enzyme active-site search.

Kato T, Nagano N. Kato T, et al. Among authors: nagano n. Bioinformatics. 2010 Nov 1;26(21):2698-704. doi: 10.1093/bioinformatics/btq519. Epub 2010 Sep 23. Bioinformatics. 2010. PMID: 20870642 Free PMC article.

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