Hadadi N - Search Results

1

A computational framework for integration of lipidomics data into metabolic pathways.

Hadadi N, Cher Soh K, Seijo M, Zisaki A, Guan X, Wenk MR, Hatzimanikatis V. Hadadi N, et al. Metab Eng. 2014 May;23:1-8. doi: 10.1016/j.ymben.2013.12.007. Epub 2014 Jan 4. Metab Eng. 2014. PMID: 24395008

2

Molecular thermodynamics of metabolism: quantum thermochemical calculations for key metabolites.

Hadadi N, Ataman M, Hatzimanikatis V, Panayiotou C. Hadadi N, et al. Phys Chem Chem Phys. 2015 Apr 28;17(16):10438-53. doi: 10.1039/c4cp05825a. Phys Chem Chem Phys. 2015. PMID: 25799954

3

Design of computational retrobiosynthesis tools for the design of de novo synthetic pathways.

Hadadi N, Hatzimanikatis V. Hadadi N, et al. Curr Opin Chem Biol. 2015 Oct;28:99-104. doi: 10.1016/j.cbpa.2015.06.025. Epub 2015 Jul 11. Curr Opin Chem Biol. 2015. PMID: 26177079 Free article. Review.

4

ATLAS of Biochemistry: A Repository of All Possible Biochemical Reactions for Synthetic Biology and Metabolic Engineering Studies.

Hadadi N, Hafner J, Shajkofci A, Zisaki A, Hatzimanikatis V. Hadadi N, et al. ACS Synth Biol. 2016 Oct 21;5(10):1155-1166. doi: 10.1021/acssynbio.6b00054. Epub 2016 Jul 28. ACS Synth Biol. 2016. PMID: 27404214

5

Molecular thermodynamics of metabolism: hydration quantities and the equation-of-state approach.

Panayiotou C, Mastrogeorgopoulos S, Ataman M, Hadadi N, Hatzimanikatis V. Panayiotou C, et al. Among authors: hadadi n. Phys Chem Chem Phys. 2016 Nov 30;18(47):32570-32592. doi: 10.1039/c6cp06281d. Phys Chem Chem Phys. 2016. PMID: 27874110

6

Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites.

Hadadi N, Hafner J, Soh KC, Hatzimanikatis V. Hadadi N, et al. Biotechnol J. 2017 Jan;12(1). doi: 10.1002/biot.201600464. Biotechnol J. 2017. PMID: 27897385

7

Exploring biochemical pathways for mono-ethylene glycol (MEG) synthesis from synthesis gas.

Islam MA, Hadadi N, Ataman M, Hatzimanikatis V, Stephanopoulos G. Islam MA, et al. Among authors: hadadi n. Metab Eng. 2017 May;41:173-181. doi: 10.1016/j.ymben.2017.04.005. Epub 2017 Apr 19. Metab Eng. 2017. PMID: 28433737

8

Discovery and Evaluation of Biosynthetic Pathways for the Production of Five Methyl Ethyl Ketone Precursors.

Tokic M, Hadadi N, Ataman M, Neves D, Ebert BE, Blank LM, Miskovic L, Hatzimanikatis V. Tokic M, et al. Among authors: hadadi n. ACS Synth Biol. 2018 Aug 17;7(8):1858-1873. doi: 10.1021/acssynbio.8b00049. Epub 2018 Aug 7. ACS Synth Biol. 2018. PMID: 30021444

9

Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites.

Hadadi N, MohammadiPeyhani H, Miskovic L, Seijo M, Hatzimanikatis V. Hadadi N, et al. Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7298-7307. doi: 10.1073/pnas.1818877116. Epub 2019 Mar 25. Proc Natl Acad Sci U S A. 2019. PMID: 30910961 Free PMC article.

10

Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models.

Pandey V, Hadadi N, Hatzimanikatis V. Pandey V, et al. Among authors: hadadi n. PLoS Comput Biol. 2019 May 13;15(5):e1007036. doi: 10.1371/journal.pcbi.1007036. eCollection 2019 May. PLoS Comput Biol. 2019. PMID: 31083653 Free PMC article.

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