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From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model.
Cuevas DA, Edirisinghe J, Henry CS, Overbeek R, O'Connell TG, Edwards RA. Cuevas DA, et al. Among authors: henry cs. Front Microbiol. 2016 Jun 17;7:907. doi: 10.3389/fmicb.2016.00907. eCollection 2016. Front Microbiol. 2016. PMID: 27379044 Free PMC article.
Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.
Faria JP, Davis JJ, Edirisinghe JN, Taylor RC, Weisenhorn P, Olson RD, Stevens RL, Rocha M, Rocha I, Best AA, DeJongh M, Tintle NL, Parrello B, Overbeek R, Henry CS. Faria JP, et al. Among authors: henry cs. Front Microbiol. 2016 Nov 24;7:1819. doi: 10.3389/fmicb.2016.01819. eCollection 2016. Front Microbiol. 2016. PMID: 27933038 Free PMC article.
Enabling comparative modeling of closely related genomes: example genus Brucella.
Faria JP, Edirisinghe JN, Davis JJ, Disz T, Hausmann A, Henry CS, Olson R, Overbeek RA, Pusch GD, Shukla M, Vonstein V, Wattam AR. Faria JP, et al. Among authors: henry cs. 3 Biotech. 2015 Feb;5(1):101-105. doi: 10.1007/s13205-014-0202-4. Epub 2014 Mar 8. 3 Biotech. 2015. PMID: 28324362 Free PMC article.
Evolution of substrate specificity in a retained enzyme driven by gene loss.
Juárez-Vázquez AL, Edirisinghe JN, Verduzco-Castro EA, Michalska K, Wu C, Noda-García L, Babnigg G, Endres M, Medina-Ruíz S, Santoyo-Flores J, Carrillo-Tripp M, Ton-That H, Joachimiak A, Henry CS, Barona-Gómez F. Juárez-Vázquez AL, et al. Among authors: henry cs. Elife. 2017 Mar 31;6:e22679. doi: 10.7554/eLife.22679. Elife. 2017. PMID: 28362260 Free PMC article.
Metabolic Reconstruction and Modeling Microbial Electrosynthesis.
Marshall CW, Ross DE, Handley KM, Weisenhorn PB, Edirisinghe JN, Henry CS, Gilbert JA, May HD, Norman RS. Marshall CW, et al. Among authors: henry cs. Sci Rep. 2017 Aug 21;7(1):8391. doi: 10.1038/s41598-017-08877-z. Sci Rep. 2017. PMID: 28827682 Free PMC article.
Reconstruction and Analysis of Central Metabolism in Microbes.
Edirisinghe JN, Faria JP, Harris NL, Allen BH, Henry CS. Edirisinghe JN, et al. Among authors: henry cs. Methods Mol Biol. 2018;1716:111-129. doi: 10.1007/978-1-4939-7528-0_5. Methods Mol Biol. 2018. PMID: 29222751 Free article.
339 results