Tsumoto K - Search Results

1

Affinity improvement of a therapeutic antibody by structure-based computational design: generation of electrostatic interactions in the transition state stabilizes the antibody-antigen complex.

Kiyoshi M, Caaveiro JM, Miura E, Nagatoishi S, Nakakido M, Soga S, Shirai H, Kawabata S, Tsumoto K. Kiyoshi M, et al. Among authors: tsumoto k. PLoS One. 2014 Jan 27;9(1):e87099. doi: 10.1371/journal.pone.0087099. eCollection 2014. PLoS One. 2014. PMID: 24475232 Free PMC article.

2

[Dissection of specificity and affinity of an antibody for its specific antigen].

Tsumoto K. Tsumoto K. Seikagaku. 2006 Feb;78(2):93-109. Seikagaku. 2006. PMID: 16541800 Review. Japanese. No abstract available.

3

Circular dichroism spectra demonstrate formation of the thrombin-binding DNA aptamer G-quadruplex under stabilizing-cation-deficient conditions.

Nagatoishi S, Tanaka Y, Tsumoto K. Nagatoishi S, et al. Among authors: tsumoto k. Biochem Biophys Res Commun. 2007 Jan 19;352(3):812-7. doi: 10.1016/j.bbrc.2006.11.088. Epub 2006 Nov 27. Biochem Biophys Res Commun. 2007. PMID: 17150180

4

The N-terminal domain of elastin-binding protein of Staphylococcus aureus changes its secondary structure in a membrane-mimetic environment.

Nakakido M, Tanaka Y, Tsumoto K. Nakakido M, et al. Among authors: tsumoto k. J Biochem. 2007 Aug;142(2):131-4. doi: 10.1093/jb/mvm131. Epub 2007 Jul 23. J Biochem. 2007. PMID: 17646183

5

Critical contribution of aromatic rings to specific recognition of polyether rings. The case of ciguatoxin CTX3C-ABC and its specific antibody 1C49.

Tsumoto K, Yokota A, Tanaka Y, Ui M, Tsumuraya T, Fujii I, Kumagai I, Nagumo Y, Oguri H, Inoue M, Hirama M. Tsumoto K, et al. J Biol Chem. 2008 May 2;283(18):12259-66. doi: 10.1074/jbc.M710553200. Epub 2008 Mar 6. J Biol Chem. 2008. PMID: 18326040 Free article.

6

Thermodynamic analysis reveals that GTP binding affects the interaction between the alpha- and gamma-subunits of translation initiation factor 2.

Nakakido M, Tanaka Y, Sokabe M, Tsumoto K. Nakakido M, et al. Among authors: tsumoto k. Biochem Biophys Res Commun. 2008 Jul 11;371(4):596-9. doi: 10.1016/j.bbrc.2008.03.101. Epub 2008 Mar 31. Biochem Biophys Res Commun. 2008. PMID: 18381064

7

Structure-based analysis reveals hydration changes induced by arginine hydrochloride.

Nakakido M, Tanaka Y, Mitsuhori M, Kudou M, Ejima D, Arakawa T, Tsumoto K. Nakakido M, et al. Among authors: tsumoto k. Biophys Chem. 2008 Oct;137(2-3):105-9. doi: 10.1016/j.bpc.2008.07.009. Epub 2008 Aug 9. Biophys Chem. 2008. PMID: 18725174

8

Contributions of interfacial residues of human Interleukin15 to the specificity and affinity for its private alpha-receptor.

Sakamoto S, Caaveiro JM, Sano E, Tanaka Y, Kudou M, Tsumoto K. Sakamoto S, et al. Among authors: tsumoto k. J Mol Biol. 2009 Jun 26;389(5):880-94. doi: 10.1016/j.jmb.2009.04.050. Epub 2009 May 3. J Mol Biol. 2009. PMID: 19406127

9

To be excluded or to bind, that is the question: Arginine effects on proteins.

Nakakido M, Kudou M, Arakawa T, Tsumoto K. Nakakido M, et al. Among authors: tsumoto k. Curr Pharm Biotechnol. 2009 Jun;10(4):415-20. doi: 10.2174/138920109788488824. Curr Pharm Biotechnol. 2009. PMID: 19519417 Review.

10

The interaction of hyperthermophilic TATA-box binding protein with single-stranded DNA is entropically favorable and exhibits a large negative heat capacity change at high salt concentration.

Nagatoishi S, Tanaka Y, Kudou M, Tsumoto K. Nagatoishi S, et al. Among authors: tsumoto k. Mol Biosyst. 2009 Sep;5(9):957-61. doi: 10.1039/b904200h. Epub 2009 May 13. Mol Biosyst. 2009. PMID: 19668860

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