Chalise P - Search Results

1

Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer.

Koestler DC, Chalise P, Cicek MS, Cunningham JM, Armasu S, Larson MC, Chien J, Block M, Kalli KR, Sellers TA, Fridley BL, Goode EL. Koestler DC, et al. Among authors: chalise p. BMC Med Genomics. 2014 Jan 30;7:8. doi: 10.1186/1755-8794-7-8. BMC Med Genomics. 2014. PMID: 24479488 Free PMC article.

2

Comparison of Penalty Functions for Sparse Canonical Correlation Analysis.

Chalise P, Fridley BL. Chalise P, et al. Comput Stat Data Anal. 2012 Feb 1;56(2):245-254. doi: 10.1016/j.csda.2011.07.012. Comput Stat Data Anal. 2012. PMID: 21984855 Free PMC article.

3

Genetic association studies of copy-number variation: should assignment of copy number states precede testing?

Breheny P, Chalise P, Batzler A, Wang L, Fridley BL. Breheny P, et al. Among authors: chalise p. PLoS One. 2012;7(4):e34262. doi: 10.1371/journal.pone.0034262. Epub 2012 Apr 6. PLoS One. 2012. PMID: 22493684 Free PMC article.

4

Simultaneous analysis of multiple data types in pharmacogenomic studies using weighted sparse canonical correlation analysis.

Chalise P, Batzler A, Abo R, Wang L, Fridley BL. Chalise P, et al. OMICS. 2012 Jul-Aug;16(7-8):363-73. doi: 10.1089/omi.2011.0126. Epub 2012 Jun 26. OMICS. 2012. PMID: 22734853 Free PMC article.

5

Germline copy number variation and ovarian cancer survival.

Fridley BL, Chalise P, Tsai YY, Sun Z, Vierkant RA, Larson MC, Cunningham JM, Iversen ES, Fenstermacher D, Barnholtz-Sloan J, Asmann Y, Risch HA, Schildkraut JM, Phelan CM, Sutphen R, Sellers TA, Goode EL. Fridley BL, et al. Among authors: chalise p. Front Genet. 2012 Aug 8;3:142. doi: 10.3389/fgene.2012.00142. eCollection 2012. Front Genet. 2012. PMID: 22891074 Free PMC article.

6

Integrative clustering methods for high-dimensional molecular data.

Chalise P, Koestler DC, Bimali M, Yu Q, Fridley BL. Chalise P, et al. Transl Cancer Res. 2014 Jun 1;3(3):202-216. doi: 10.3978/j.issn.2218-676X.2014.06.03. Transl Cancer Res. 2014. PMID: 25243110 Free PMC article.

7

InterSIM: Simulation tool for multiple integrative 'omic datasets'.

Chalise P, Raghavan R, Fridley BL. Chalise P, et al. Comput Methods Programs Biomed. 2016 May;128:69-74. doi: 10.1016/j.cmpb.2016.02.011. Epub 2016 Feb 27. Comput Methods Programs Biomed. 2016. PMID: 27040832 Free PMC article.

8

An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients.

Meier R, Graw S, Usset J, Raghavan R, Dai J, Chalise P, Ellis S, Fridley B, Koestler D. Meier R, et al. Among authors: chalise p. F1000Res. 2016 Nov 16;5:2677. doi: 10.12688/f1000research.8226.1. eCollection 2016. F1000Res. 2016. PMID: 28413609 Free PMC article.

9

Integrative clustering of multi-level 'omic data based on non-negative matrix factorization algorithm.

Chalise P, Fridley BL. Chalise P, et al. PLoS One. 2017 May 1;12(5):e0176278. doi: 10.1371/journal.pone.0176278. eCollection 2017. PLoS One. 2017. PMID: 28459819 Free PMC article.

10

Effect of Bazedoxifene and Conjugated Estrogen (Duavee) on Breast Cancer Risk Biomarkers in High-Risk Women: A Pilot Study.

Fabian CJ, Nye L, Powers KR, Nydegger JL, Kreutzjans AL, Phillips TA, Metheny T, Winblad O, Zalles CM, Hagan CR, Goodman ML, Gajewski BJ, Koestler DC, Chalise P, Kimler BF. Fabian CJ, et al. Among authors: chalise p. Cancer Prev Res (Phila). 2019 Oct;12(10):711-720. doi: 10.1158/1940-6207.CAPR-19-0315. Epub 2019 Aug 16. Cancer Prev Res (Phila). 2019. PMID: 31420361 Free PMC article. Clinical Trial.

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