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iVUN: interactive Visualization of Uncertain biochemical reaction Networks.
Vehlow C, Hasenauer J, Kramer A, Raue A, Hug S, Timmer J, Radde N, Theis FJ, Weiskopf D. Vehlow C, et al. Among authors: kramer a. BMC Bioinformatics. 2013;14 Suppl 19(Suppl 19):S2. doi: 10.1186/1471-2105-14-S19-S2. Epub 2013 Nov 12. BMC Bioinformatics. 2013. PMID: 24564335 Free PMC article.
Hamiltonian Monte Carlo methods for efficient parameter estimation in steady state dynamical systems.
Kramer A, Calderhead B, Radde N. Kramer A, et al. BMC Bioinformatics. 2014 Jul 28;15(1):253. doi: 10.1186/1471-2105-15-253. BMC Bioinformatics. 2014. PMID: 25066046 Free PMC article.
RESULTS: We show how state of the art Hamiltonian Monte Carlo methods may be significantly improved for steady state dynamical models. We present a novel approach for efficiently calculating the required geometric quantities by tracking steady states across the Hamiltonian …
RESULTS: We show how state of the art Hamiltonian Monte Carlo methods may be significantly improved for steady state dynamical models. We pr …
MCMC_CLIB-an advanced MCMC sampling package for ODE models.
Kramer A, Stathopoulos V, Girolami M, Radde N. Kramer A, et al. Bioinformatics. 2014 Oct 15;30(20):2991-2. doi: 10.1093/bioinformatics/btu429. Epub 2014 Jul 7. Bioinformatics. 2014. PMID: 25005749
AVAILABILITY AND IMPLEMENTATION: The source code and binary files are freely available for download at http://a-kramer.github.io/mcmc_clib/. This also includes example files and data. A detailed documentation, an example model and user manual are provided wit …
AVAILABILITY AND IMPLEMENTATION: The source code and binary files are freely available for download at http://a-kramer.github. …
Effects of an initial anti-CD19 CAR T-cell therapy on subsequent anti-CD22 CAR T-cell manufacturing and clinical outcomes in patients with r/r LBCL.
Su YJ, Kramer AM, Hamilton MP, Agarwal N, Srinagesh HK, Baird JH, Sahaf B, Kuo A, Ehlinger ZJ, Desai MH, Rietberg SP, Tunuguntla R, Patel S, Chinnasamy H, Gkitsas-Long N, Klysz DD, Brown AK, Bharadwaj S, Dahiya S, Smith M, Muffly L, Mackall CL, Good Z, Feldman SA, Miklos DB, Frank MJ. Su YJ, et al. Among authors: kramer am. Cancer Discov. 2025 Jan 7. doi: 10.1158/2159-8290.CD-24-1071. Online ahead of print. Cancer Discov. 2025. PMID: 39775812
Cardiorespiratory fitness, hippocampal subfield morphology, and episodic memory in older adults.
Ripperger HS, Reed RG, Kang C, Lesnovskaya A, Aghjayan SL, Huang H, Wan L, Sutton BP, Oberlin L, Collins AM, Burns JM, Vidoni ED, Kramer AF, McAuley E, Hillman CH, Grove GA, Jakicic JM, Erickson KI. Ripperger HS, et al. Among authors: kramer af. Front Aging Neurosci. 2024 Dec 19;16:1466328. doi: 10.3389/fnagi.2024.1466328. eCollection 2024. Front Aging Neurosci. 2024. PMID: 39749255 Free PMC article.
3,095 results