Stockwell PA - Search Results

1

DMAP: differential methylation analysis package for RRBS and WGBS data.

Stockwell PA, Chatterjee A, Rodger EJ, Morison IM. Stockwell PA, et al. Bioinformatics. 2014 Jul 1;30(13):1814-22. doi: 10.1093/bioinformatics/btu126. Epub 2014 Mar 7. Bioinformatics. 2014. PMID: 24608764

2

Comparison of alignment software for genome-wide bisulphite sequence data.

Chatterjee A, Stockwell PA, Rodger EJ, Morison IM. Chatterjee A, et al. Among authors: stockwell pa. Nucleic Acids Res. 2012 May;40(10):e79. doi: 10.1093/nar/gks150. Epub 2012 Feb 16. Nucleic Acids Res. 2012. PMID: 22344695 Free PMC article.

3

Mapping the zebrafish brain methylome using reduced representation bisulfite sequencing.

Chatterjee A, Ozaki Y, Stockwell PA, Horsfield JA, Morison IM, Nakagawa S. Chatterjee A, et al. Among authors: stockwell pa. Epigenetics. 2013 Sep;8(9):979-89. doi: 10.4161/epi.25797. Epub 2013 Jul 24. Epigenetics. 2013. PMID: 23975027 Free PMC article.

4

Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation.

Chatterjee A, Stockwell PA, Rodger EJ, Duncan EJ, Parry MF, Weeks RJ, Morison IM. Chatterjee A, et al. Among authors: stockwell pa. Sci Rep. 2015 Nov 27;5:17328. doi: 10.1038/srep17328. Sci Rep. 2015. PMID: 26612583 Free PMC article.

5

Tools and Strategies for Analysis of Genome-Wide and Gene-Specific DNA Methylation Patterns.

Chatterjee A, Rodger EJ, Morison IM, Eccles MR, Stockwell PA. Chatterjee A, et al. Among authors: stockwell pa. Methods Mol Biol. 2017;1537:249-277. doi: 10.1007/978-1-4939-6685-1_15. Methods Mol Biol. 2017. PMID: 27924599 Review.

6

Generating Multiple Base-Resolution DNA Methylomes Using Reduced Representation Bisulfite Sequencing.

Chatterjee A, Rodger EJ, Stockwell PA, Le Mée G, Morison IM. Chatterjee A, et al. Among authors: stockwell pa. Methods Mol Biol. 2017;1537:279-298. doi: 10.1007/978-1-4939-6685-1_16. Methods Mol Biol. 2017. PMID: 27924600

7

Genome-wide methylation sequencing of paired primary and metastatic cell lines identifies common DNA methylation changes and a role for EBF3 as a candidate epigenetic driver of melanoma metastasis.

Chatterjee A, Stockwell PA, Ahn A, Rodger EJ, Leichter AL, Eccles MR. Chatterjee A, et al. Among authors: stockwell pa. Oncotarget. 2017 Jan 24;8(4):6085-6101. doi: 10.18632/oncotarget.14042. Oncotarget. 2017. PMID: 28030832 Free PMC article.

8

Comparative assessment of DNA methylation patterns between reduced representation bisulfite sequencing and Sequenom EpiTyper methylation analysis.

Chatterjee A, Macaulay EC, Ahn A, Ludgate JL, Stockwell PA, Weeks RJ, Parry MF, Foster TJ, Knarston IM, Eccles MR, Morison IM. Chatterjee A, et al. Among authors: stockwell pa. Epigenomics. 2017 Jun;9(6):823-832. doi: 10.2217/epi-2016-0176. Epub 2017 May 19. Epigenomics. 2017. PMID: 28523967

9

A streamlined method for analysing genome-wide DNA methylation patterns from low amounts of FFPE DNA.

Ludgate JL, Wright J, Stockwell PA, Morison IM, Eccles MR, Chatterjee A. Ludgate JL, et al. Among authors: stockwell pa. BMC Med Genomics. 2017 Aug 31;10(1):54. doi: 10.1186/s12920-017-0290-1. BMC Med Genomics. 2017. PMID: 28859641 Free PMC article.

10

A Guide for Designing and Analyzing RNA-Seq Data.

Chatterjee A, Ahn A, Rodger EJ, Stockwell PA, Eccles MR. Chatterjee A, et al. Among authors: stockwell pa. Methods Mol Biol. 2018;1783:35-80. doi: 10.1007/978-1-4939-7834-2_3. Methods Mol Biol. 2018. PMID: 29767357

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