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Page 1
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism.
Corominas R, Yang X, Lin GN, Kang S, Shen Y, Ghamsari L, Broly M, Rodriguez M, Tam S, Wanamaker SA, Fan C, Yi S, Tasan M, Lemmens I, Kuang X, Zhao N, Malhotra D, Michaelson JJ, Vacic V, Calderwood MA, Roth FP, Tavernier J, Horvath S, Salehi-Ashtiani K, Korkin D, Sebat J, Hill DE, Hao T, Vidal M, Iakoucheva LM. Corominas R, et al. Among authors: tasan m. Nat Commun. 2014 Apr 11;5:3650. doi: 10.1038/ncomms4650. Nat Commun. 2014. PMID: 24722188 Free PMC article.
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.
Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis AR, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabási AL, Baillie D, Vidal M. Dupuy D, et al. Among authors: tasan m. Nat Biotechnol. 2007 Jun;25(6):663-8. doi: 10.1038/nbt1305. Epub 2007 May 7. Nat Biotechnol. 2007. PMID: 17486083
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP. Peña-Castillo L, et al. Among authors: tasan m. Genome Biol. 2008;9 Suppl 1(Suppl 1):S2. doi: 10.1186/gb-2008-9-s1-s2. Epub 2008 Jun 27. Genome Biol. 2008. PMID: 18613946 Free PMC article.
An experimentally derived confidence score for binary protein-protein interactions.
Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, Sahalie JM, Murray RR, Roncari L, de Smet AS, Venkatesan K, Rual JF, Vandenhaute J, Cusick ME, Pawson T, Hill DE, Tavernier J, Wrana JL, Roth FP, Vidal M. Braun P, et al. Among authors: tasan m. Nat Methods. 2009 Jan;6(1):91-7. doi: 10.1038/nmeth.1281. Epub 2008 Dec 7. Nat Methods. 2009. PMID: 19060903 Free PMC article.
Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.
Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M. Simonis N, et al. Among authors: tasan m. Nat Methods. 2009 Jan;6(1):47-54. doi: 10.1038/nmeth.1279. Nat Methods. 2009. PMID: 19123269 Free PMC article.
Next generation software for functional trend analysis.
Berriz GF, Beaver JE, Cenik C, Tasan M, Roth FP. Berriz GF, et al. Among authors: tasan m. Bioinformatics. 2009 Nov 15;25(22):3043-4. doi: 10.1093/bioinformatics/btp498. Epub 2009 Aug 28. Bioinformatics. 2009. PMID: 19717575 Free PMC article.
FuncBase: a resource for quantitative gene function annotation.
Beaver JE, Tasan M, Gibbons FD, Tian W, Hughes TR, Roth FP. Beaver JE, et al. Among authors: tasan m. Bioinformatics. 2010 Jul 15;26(14):1806-7. doi: 10.1093/bioinformatics/btq265. Epub 2010 May 21. Bioinformatics. 2010. PMID: 20495000 Free PMC article.
29 results