Kaplan CD - Search Results

1

Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms.

Schweikhard V, Meng C, Murakami K, Kaplan CD, Kornberg RD, Block SM. Schweikhard V, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2014 May 6;111(18):6642-7. doi: 10.1073/pnas.1405181111. Epub 2014 Apr 14. Proc Natl Acad Sci U S A. 2014. PMID: 24733897 Free PMC article.

2

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis.

Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD. Wang D, et al. Among authors: kaplan cd. Cell. 2006 Dec 1;127(5):941-54. doi: 10.1016/j.cell.2006.11.023. Cell. 2006. PMID: 17129781 Free PMC article.

3

The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin.

Kaplan CD, Larsson KM, Kornberg RD. Kaplan CD, et al. Mol Cell. 2008 Jun 6;30(5):547-56. doi: 10.1016/j.molcel.2008.04.023. Mol Cell. 2008. PMID: 18538653 Free PMC article.

4

A bridge to transcription by RNA polymerase.

Kaplan CD, Kornberg RD. Kaplan CD, et al. J Biol. 2008 Dec 2;7(10):39. doi: 10.1186/jbiol99. J Biol. 2008. PMID: 19090964 Free PMC article.

5

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation.

Murakami K, Gibbons BJ, Davis RE, Nagai S, Liu X, Robinson PJ, Wu T, Kaplan CD, Kornberg RD. Murakami K, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4816-21. doi: 10.1073/pnas.1201448109. Epub 2012 Mar 12. Proc Natl Acad Sci U S A. 2012. PMID: 22411836 Free PMC article.

6

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.

Larson MH, Zhou J, Kaplan CD, Palangat M, Kornberg RD, Landick R, Block SM. Larson MH, et al. Among authors: kaplan cd. Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6555-60. doi: 10.1073/pnas.1200939109. Epub 2012 Apr 9. Proc Natl Acad Sci U S A. 2012. PMID: 22493230 Free PMC article.

7

RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template.

Pai DA, Kaplan CD, Kweon HK, Murakami K, Andrews PC, Engelke DR. Pai DA, et al. Among authors: kaplan cd. RNA. 2014 May;20(5):644-55. doi: 10.1261/rna.040444.113. Epub 2014 Mar 10. RNA. 2014. PMID: 24614752 Free PMC article.

8

Uncoupling Promoter Opening from Start-Site Scanning.

Murakami K, Mattei PJ, Davis RE, Jin H, Kaplan CD, Kornberg RD. Murakami K, et al. Among authors: kaplan cd. Mol Cell. 2015 Jul 2;59(1):133-8. doi: 10.1016/j.molcel.2015.05.021. Epub 2015 Jun 11. Mol Cell. 2015. PMID: 26073544 Free PMC article.

9

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.

Barnes CO, Calero M, Malik I, Graham BW, Spahr H, Lin G, Cohen AE, Brown IS, Zhang Q, Pullara F, Trakselis MA, Kaplan CD, Calero G. Barnes CO, et al. Among authors: kaplan cd. Mol Cell. 2015 Jul 16;59(2):258-69. doi: 10.1016/j.molcel.2015.06.034. Mol Cell. 2015. PMID: 26186291 Free PMC article.

10

Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair.

van Eeuwen T, Shim Y, Kim HJ, Zhao T, Basu S, Garcia BA, Kaplan CD, Min JH, Murakami K. van Eeuwen T, et al. Among authors: kaplan cd. Nat Commun. 2021 Jun 7;12(1):3338. doi: 10.1038/s41467-021-23684-x. Nat Commun. 2021. PMID: 34099686 Free PMC article.

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