Vogel C - Search Results

1

Protein-to-mRNA ratios are conserved between Pseudomonas aeruginosa strains.

Kwon T, Huse HK, Vogel C, Whiteley M, Marcotte EM. Kwon T, et al. Among authors: vogel c. J Proteome Res. 2014 May 2;13(5):2370-80. doi: 10.1021/pr4011684. Epub 2014 Apr 17. J Proteome Res. 2014. PMID: 24742327 Free PMC article.

2

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Lu P, Vogel C, Wang R, Yao X, Marcotte EM. Lu P, et al. Among authors: vogel c. Nat Biotechnol. 2007 Jan;25(1):117-24. doi: 10.1038/nbt1270. Epub 2006 Dec 24. Nat Biotechnol. 2007. PMID: 17187058

3

Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data.

Vogel C, Marcotte EM. Vogel C, et al. Nat Protoc. 2008;3(9):1444-51. doi: 10.1038/nport.2008.132. Nat Protoc. 2008. PMID: 18772871

4

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R. Braisted JC, et al. Among authors: vogel c. BMC Bioinformatics. 2008 Dec 9;9:529. doi: 10.1186/1471-2105-9-529. BMC Bioinformatics. 2008. PMID: 19068132 Free PMC article.

5

Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation.

Hannay K, Marcotte EM, Vogel C. Hannay K, et al. Among authors: vogel c. BMC Genomics. 2008 Dec 16;9:609. doi: 10.1186/1471-2164-9-609. BMC Genomics. 2008. PMID: 19087332 Free PMC article.

6

Integrating shotgun proteomics and mRNA expression data to improve protein identification.

Ramakrishnan SR, Vogel C, Prince JT, Li Z, Penalva LO, Myers M, Marcotte EM, Miranker DP, Wang R. Ramakrishnan SR, et al. Among authors: vogel c. Bioinformatics. 2009 Jun 1;25(11):1397-403. doi: 10.1093/bioinformatics/btp168. Epub 2009 Mar 24. Bioinformatics. 2009. PMID: 19318424 Free PMC article.

7

Mining gene functional networks to improve mass-spectrometry-based protein identification.

Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP. Ramakrishnan SR, et al. Among authors: vogel c. Bioinformatics. 2009 Nov 15;25(22):2955-61. doi: 10.1093/bioinformatics/btp461. Epub 2009 Jul 24. Bioinformatics. 2009. PMID: 19633097 Free PMC article.

8

Absolute abundance for the masses.

Vogel C, Marcotte EM. Vogel C, et al. Nat Biotechnol. 2009 Sep;27(9):825-6. doi: 10.1038/nbt0909-825. Nat Biotechnol. 2009. PMID: 19741640 Free PMC article.

9

Global signatures of protein and mRNA expression levels.

de Sousa Abreu R, Penalva LO, Marcotte EM, Vogel C. de Sousa Abreu R, et al. Among authors: vogel c. Mol Biosyst. 2009 Dec;5(12):1512-26. doi: 10.1039/b908315d. Epub 2009 Oct 1. Mol Biosyst. 2009. PMID: 20023718 Free PMC article. Review.

10

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line.

Vogel C, Abreu Rde S, Ko D, Le SY, Shapiro BA, Burns SC, Sandhu D, Boutz DR, Marcotte EM, Penalva LO. Vogel C, et al. Mol Syst Biol. 2010 Aug 24;6:400. doi: 10.1038/msb.2010.59. Mol Syst Biol. 2010. PMID: 20739923 Free PMC article.

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