Lawrence ND - Search Results

1

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.

wa Maina C, Honkela A, Matarese F, Grote K, Stunnenberg HG, Reid G, Lawrence ND, Rattray M. wa Maina C, et al. Among authors: lawrence nd. PLoS Comput Biol. 2014 May 15;10(5):e1003598. doi: 10.1371/journal.pcbi.1003598. eCollection 2014 May. PLoS Comput Biol. 2014. PMID: 24830797 Free PMC article.

2

A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.

Liu X, Milo M, Lawrence ND, Rattray M. Liu X, et al. Among authors: lawrence nd. Bioinformatics. 2005 Sep 15;21(18):3637-44. doi: 10.1093/bioinformatics/bti583. Epub 2005 Jul 14. Bioinformatics. 2005. PMID: 16020470

3

Accounting for probe-level noise in principal component analysis of microarray data.

Sanguinetti G, Milo M, Rattray M, Lawrence ND. Sanguinetti G, et al. Among authors: lawrence nd. Bioinformatics. 2005 Oct 1;21(19):3748-54. doi: 10.1093/bioinformatics/bti617. Epub 2005 Aug 9. Bioinformatics. 2005. PMID: 16091409

4

A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription.

Sanguinetti G, Rattray M, Lawrence ND. Sanguinetti G, et al. Among authors: lawrence nd. Bioinformatics. 2006 Jul 15;22(14):1753-9. doi: 10.1093/bioinformatics/btl154. Epub 2006 Apr 21. Bioinformatics. 2006. PMID: 16632490

5

Propagating uncertainty in microarray data analysis.

Rattray M, Liu X, Sanguinetti G, Milo M, Lawrence ND. Rattray M, et al. Among authors: lawrence nd. Brief Bioinform. 2006 Mar;7(1):37-47. doi: 10.1093/bib/bbk003. Brief Bioinform. 2006. PMID: 16761363 Review.

6

Probe-level measurement error improves accuracy in detecting differential gene expression.

Liu X, Milo M, Lawrence ND, Rattray M. Liu X, et al. Among authors: lawrence nd. Bioinformatics. 2006 Sep 1;22(17):2107-13. doi: 10.1093/bioinformatics/btl361. Epub 2006 Jul 4. Bioinformatics. 2006. PMID: 16820429

7

Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities.

Sanguinetti G, Lawrence ND, Rattray M. Sanguinetti G, et al. Among authors: lawrence nd. Bioinformatics. 2006 Nov 15;22(22):2775-81. doi: 10.1093/bioinformatics/btl473. Epub 2006 Sep 11. Bioinformatics. 2006. PMID: 16966362

8

Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities.

Gao P, Honkela A, Rattray M, Lawrence ND. Gao P, et al. Among authors: lawrence nd. Bioinformatics. 2008 Aug 15;24(16):i70-5. doi: 10.1093/bioinformatics/btn278. Bioinformatics. 2008. PMID: 18689843

9

puma: a Bioconductor package for propagating uncertainty in microarray analysis.

Pearson RD, Liu X, Sanguinetti G, Milo M, Lawrence ND, Rattray M. Pearson RD, et al. Among authors: lawrence nd. BMC Bioinformatics. 2009 Jul 9;10:211. doi: 10.1186/1471-2105-10-211. BMC Bioinformatics. 2009. PMID: 19589155 Free PMC article.

10

Model-based method for transcription factor target identification with limited data.

Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M. Honkela A, et al. Among authors: lawrence nd. Proc Natl Acad Sci U S A. 2010 Apr 27;107(17):7793-8. doi: 10.1073/pnas.0914285107. Epub 2010 Apr 12. Proc Natl Acad Sci U S A. 2010. PMID: 20385836 Free PMC article.

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