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Class of cyclic ribosomal peptide synthetic genes in filamentous fungi.
Nagano N, Umemura M, Izumikawa M, Kawano J, Ishii T, Kikuchi M, Tomii K, Kumagai T, Yoshimi A, Machida M, Abe K, Shin-Ya K, Asai K. Nagano N, et al. Fungal Genet Biol. 2016 Jan;86:58-70. doi: 10.1016/j.fgb.2015.12.010. Epub 2015 Dec 15. Fungal Genet Biol. 2016. PMID: 26703898 Free article.
MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.
Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M. Umemura M, et al. Among authors: nagano n. PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013. PLoS One. 2013. PMID: 24391870 Free PMC article.
EzCatDB: the enzyme reaction database, 2015 update.
Nagano N, Nakayama N, Ikeda K, Fukuie M, Yokota K, Doi T, Kato T, Tomii K. Nagano N, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D453-8. doi: 10.1093/nar/gku946. Epub 2014 Oct 16. Nucleic Acids Res. 2015. PMID: 25324316 Free PMC article.
SAHG, a comprehensive database of predicted structures of all human proteins.
Motono C, Nakata J, Koike R, Shimizu K, Shirota M, Amemiya T, Tomii K, Nagano N, Sakaya N, Misoo K, Sato M, Kidera A, Hiroaki H, Shirai T, Kinoshita K, Noguchi T, Ota M. Motono C, et al. Among authors: nagano n. Nucleic Acids Res. 2011 Jan;39(Database issue):D487-93. doi: 10.1093/nar/gkq1057. Epub 2010 Nov 3. Nucleic Acids Res. 2011. PMID: 21051360 Free PMC article.
Metric learning for enzyme active-site search.
Kato T, Nagano N. Kato T, et al. Among authors: nagano n. Bioinformatics. 2010 Nov 1;26(21):2698-704. doi: 10.1093/bioinformatics/btq519. Epub 2010 Sep 23. Bioinformatics. 2010. PMID: 20870642 Free PMC article.
502 results