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Page 1
Signaling hypergraphs.
Ritz A, Tegge AN, Kim H, Poirel CL, Murali TM. Ritz A, et al. Among authors: poirel cl. Trends Biotechnol. 2014 Jul;32(7):356-62. doi: 10.1016/j.tibtech.2014.04.007. Epub 2014 May 22. Trends Biotechnol. 2014. PMID: 24857424 Free PMC article.
Reverse engineering molecular hypergraphs.
Rahman A, Poirel CL, Badger DJ, Estep C, Murali TM. Rahman A, et al. Among authors: poirel cl. IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1113-24. doi: 10.1109/TCBB.2013.71. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24384702 Free PMC article.
Network-based functional enrichment.
Poirel CL, Owens CC 3rd, Murali TM. Poirel CL, et al. BMC Bioinformatics. 2011;12 Suppl 13(Suppl 13):S14. doi: 10.1186/1471-2105-12-s13-s14. Epub 2011 Nov 30. BMC Bioinformatics. 2011. PMID: 22479706 Free PMC article.
Pathways on demand: automated reconstruction of human signaling networks.
Ritz A, Poirel CL, Tegge AN, Sharp N, Simmons K, Powell A, Kale SD, Murali TM. Ritz A, et al. Among authors: poirel cl. NPJ Syst Biol Appl. 2016 Mar 3;2:16002. doi: 10.1038/npjsba.2016.2. eCollection 2016. NPJ Syst Biol Appl. 2016. PMID: 28725467 Free PMC article.
GraphSpace: stimulating interdisciplinary collaborations in network biology.
Bharadwaj A, Singh DP, Ritz A, Tegge AN, Poirel CL, Kraikivski P, Adames N, Luther K, Kale SD, Peccoud J, Tyson JJ, Murali TM. Bharadwaj A, et al. Among authors: poirel cl. Bioinformatics. 2017 Oct 1;33(19):3134-3136. doi: 10.1093/bioinformatics/btx382. Bioinformatics. 2017. PMID: 28957495 Free PMC article.
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.
Tarca AL, Lauria M, Unger M, Bilal E, Boue S, Kumar Dey K, Hoeng J, Koeppl H, Martin F, Meyer P, Nandy P, Norel R, Peitsch M, Rice JJ, Romero R, Stolovitzky G, Talikka M, Xiang Y, Zechner C; IMPROVER DSC Collaborators. Tarca AL, et al. Bioinformatics. 2013 Nov 15;29(22):2892-9. doi: 10.1093/bioinformatics/btt492. Epub 2013 Aug 20. Bioinformatics. 2013. PMID: 23966112 Free PMC article.