Egea JA - Search Results

1

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.

Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR, Saez-Rodriguez J. Egea JA, et al. BMC Bioinformatics. 2014 May 10;15:136. doi: 10.1186/1471-2105-15-136. BMC Bioinformatics. 2014. PMID: 24885957 Free PMC article.

2

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems.

Rodriguez-Fernandez M, Egea JA, Banga JR. Rodriguez-Fernandez M, et al. Among authors: egea ja. BMC Bioinformatics. 2006 Nov 2;7:483. doi: 10.1186/1471-2105-7-483. BMC Bioinformatics. 2006. PMID: 17081289 Free PMC article.

3

Global optimization in systems biology: stochastic methods and their applications.

Balsa-Canto E, Banga JR, Egea JA, Fernandez-Villaverde A, de Hijas-Liste GM. Balsa-Canto E, et al. Among authors: egea ja. Adv Exp Med Biol. 2012;736:409-24. doi: 10.1007/978-1-4419-7210-1_24. Adv Exp Med Biol. 2012. PMID: 22161343

4

Deterministic global optimization algorithm based on outer approximation for the parameter estimation of nonlinear dynamic biological systems.

Miró A, Pozo C, Guillén-Gosálbez G, Egea JA, Jiménez L. Miró A, et al. Among authors: egea ja. BMC Bioinformatics. 2012 May 10;13:90. doi: 10.1186/1471-2105-13-90. BMC Bioinformatics. 2012. PMID: 22574924 Free PMC article.

5

A cooperative strategy for parameter estimation in large scale systems biology models.

Villaverde AF, Egea JA, Banga JR. Villaverde AF, et al. Among authors: egea ja. BMC Syst Biol. 2012 Jun 22;6:75. doi: 10.1186/1752-0509-6-75. BMC Syst Biol. 2012. PMID: 22727112 Free PMC article.

6

Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy.

Penas DR, González P, Egea JA, Doallo R, Banga JR. Penas DR, et al. Among authors: egea ja. BMC Bioinformatics. 2017 Jan 21;18(1):52. doi: 10.1186/s12859-016-1452-4. BMC Bioinformatics. 2017. PMID: 28109249 Free PMC article.

7

Improving the EFMs quality by augmenting their representativeness in LP methods.

Hidalgo JF, Egea JA, Guil F, García JM. Hidalgo JF, et al. Among authors: egea ja. BMC Syst Biol. 2018 Nov 20;12(Suppl 5):101. doi: 10.1186/s12918-018-0619-1. BMC Syst Biol. 2018. PMID: 30458791 Free PMC article.

8

Reducing the uncertainty on chilling requirements for endodormancy breaking of temperate fruits by data-based parameter estimation of the dynamic model: a test case in apricot.

Egea JA, Egea J, Ruiz D. Egea JA, et al. Among authors: egea j. Tree Physiol. 2021 Apr 8;41(4):644-656. doi: 10.1093/treephys/tpaa054. Tree Physiol. 2021. PMID: 32348498 Free PMC article.

9

Mathematical quantification of the induced stress resistance of microbial populations during non-isothermal stresses.

Garre A, Huertas JP, González-Tejedor GA, Fernández PS, Egea JA, Palop A, Esnoz A. Garre A, et al. Among authors: egea ja. Int J Food Microbiol. 2018 Feb 2;266:133-141. doi: 10.1016/j.ijfoodmicro.2017.11.023. Epub 2017 Nov 27. Int J Food Microbiol. 2018. PMID: 29216553

10

Bioinactivation FE: A free web application for modelling isothermal and dynamic microbial inactivation.

Garre A, Clemente-Carazo M, Fernández PS, Lindqvist R, Egea JA. Garre A, et al. Among authors: egea ja. Food Res Int. 2018 Oct;112:353-360. doi: 10.1016/j.foodres.2018.06.057. Epub 2018 Jun 25. Food Res Int. 2018. PMID: 30131146

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