MacNamara A - Search Results

1

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.

Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR, Saez-Rodriguez J. Egea JA, et al. Among authors: macnamara a. BMC Bioinformatics. 2014 May 10;15:136. doi: 10.1186/1471-2105-15-136. BMC Bioinformatics. 2014. PMID: 24885957 Free PMC article.

2

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms.

Terfve C, Cokelaer T, Henriques D, MacNamara A, Goncalves E, Morris MK, van Iersel M, Lauffenburger DA, Saez-Rodriguez J. Terfve C, et al. Among authors: macnamara a. BMC Syst Biol. 2012 Oct 18;6:133. doi: 10.1186/1752-0509-6-133. BMC Syst Biol. 2012. PMID: 23079107 Free PMC article.

3

Modeling signaling networks with different formalisms: a preview.

MacNamara A, Henriques D, Saez-Rodriguez J. MacNamara A, et al. Methods Mol Biol. 2013;1021:89-105. doi: 10.1007/978-1-62703-450-0_5. Methods Mol Biol. 2013. PMID: 23715981

4

A single-cell model of PIP3 dynamics using chemical dimerization.

MacNamara A, Stein F, Feng S, Schultz C, Saez-Rodriguez J. MacNamara A, et al. Bioorg Med Chem. 2015 Jun 15;23(12):2868-76. doi: 10.1016/j.bmc.2015.04.074. Epub 2015 May 7. Bioorg Med Chem. 2015. PMID: 26004322 Free article.

5

State-time spectrum of signal transduction logic models.

MacNamara A, Terfve C, Henriques D, Bernabé BP, Saez-Rodriguez J. MacNamara A, et al. Phys Biol. 2012 Aug;9(4):045003. doi: 10.1088/1478-3975/9/4/045003. Epub 2012 Aug 7. Phys Biol. 2012. PMID: 22871648 Review.

6

Modeling Signaling Networks to Advance New Cancer Therapies.

Saez-Rodriguez J, MacNamara A, Cook S. Saez-Rodriguez J, et al. Among authors: macnamara a. Annu Rev Biomed Eng. 2015;17:143-63. doi: 10.1146/annurev-bioeng-071813-104927. Epub 2015 Aug 14. Annu Rev Biomed Eng. 2015. PMID: 26274601 Review.

7

A rapidly reversible chemical dimerizer system to study lipid signaling in living cells.

Feng S, Laketa V, Stein F, Rutkowska A, MacNamara A, Depner S, Klingmüller U, Saez-Rodriguez J, Schultz C. Feng S, et al. Among authors: macnamara a. Angew Chem Int Ed Engl. 2014 Jun 23;53(26):6720-3. doi: 10.1002/anie.201402294. Epub 2014 May 19. Angew Chem Int Ed Engl. 2014. PMID: 24841150

8

PIP₃ induces the recycling of receptor tyrosine kinases.

Laketa V, Zarbakhsh S, Traynor-Kaplan A, Macnamara A, Subramanian D, Putyrski M, Mueller R, Nadler A, Mentel M, Saez-Rodriguez J, Pepperkok R, Schultz C. Laketa V, et al. Among authors: macnamara a. Sci Signal. 2014 Jan 14;7(308):ra5. doi: 10.1126/scisignal.2004532. Sci Signal. 2014. PMID: 24425787

9

Network and pathway expansion of genetic disease associations identifies successful drug targets.

MacNamara A, Nakic N, Amin Al Olama A, Guo C, Sieber KB, Hurle MR, Gutteridge A. MacNamara A, et al. Sci Rep. 2020 Dec 1;10(1):20970. doi: 10.1038/s41598-020-77847-9. Sci Rep. 2020. PMID: 33262371 Free PMC article.

10

T-cell epitope prediction: rescaling can mask biological variation between MHC molecules.

MacNamara A, Kadolsky U, Bangham CR, Asquith B. MacNamara A, et al. PLoS Comput Biol. 2009 Mar;5(3):e1000327. doi: 10.1371/journal.pcbi.1000327. Epub 2009 Mar 20. PLoS Comput Biol. 2009. PMID: 19300484 Free PMC article.

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