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A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.
Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY. Naccache SN, et al. Among authors: lee d. Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4. Genome Res. 2014. PMID: 24899342 Free PMC article.
A novel rhabdovirus associated with acute hemorrhagic fever in central Africa.
Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. Grard G, et al. Among authors: lee d. PLoS Pathog. 2012 Sep;8(9):e1002924. doi: 10.1371/journal.ppat.1002924. Epub 2012 Sep 27. PLoS Pathog. 2012. PMID: 23028323 Free PMC article.
Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection.
Berg MG, Lee D, Coller K, Frankel M, Aronsohn A, Cheng K, Forberg K, Marcinkus M, Naccache SN, Dawson G, Brennan C, Jensen DM, Hackett J Jr, Chiu CY. Berg MG, et al. Among authors: lee d. PLoS Pathog. 2015 Dec 11;11(12):e1005325. doi: 10.1371/journal.ppat.1005325. eCollection 2015 Dec. PLoS Pathog. 2015. PMID: 26658760 Free PMC article.
In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer.
Lee D, Das Gupta J, Gaughan C, Steffen I, Tang N, Luk KC, Qiu X, Urisman A, Fischer N, Molinaro R, Broz M, Schochetman G, Klein EA, Ganem D, Derisi JL, Simmons G, Hackett J Jr, Silverman RH, Chiu CY. Lee D, et al. PLoS One. 2012;7(9):e44954. doi: 10.1371/journal.pone.0044954. Epub 2012 Sep 18. PLoS One. 2012. PMID: 23028701 Free PMC article.
Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa.
Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. Grard G, et al. Among authors: lee d. PLoS Pathog. 2016 Mar 18;12(3):e1005503. doi: 10.1371/journal.ppat.1005503. eCollection 2016 Mar. PLoS Pathog. 2016. PMID: 26991269 Free PMC article. No abstract available.
Correction: Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa.
Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. Grard G, et al. Among authors: lee d. PLoS Pathog. 2017 Sep 7;13(9):e1006583. doi: 10.1371/journal.ppat.1006583. eCollection 2017 Sep. PLoS Pathog. 2017. PMID: 28880960 Free PMC article.
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