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CNV-guided multi-read allocation for ChIP-seq.
Zhang Q, Keleş S. Zhang Q, et al. Among authors: keles s. Bioinformatics. 2014 Oct 15;30(20):2860-7. doi: 10.1093/bioinformatics/btu402. Epub 2014 Jun 24. Bioinformatics. 2014. PMID: 24966364 Free PMC article.
Identification of regulatory elements using a feature selection method.
Keleş S, van der Laan M, Eisen MB. Keleş S, et al. Bioinformatics. 2002 Sep;18(9):1167-75. doi: 10.1093/bioinformatics/18.9.1167. Bioinformatics. 2002. PMID: 12217908
We apply this method to a publicly available dataset of the yeast Saccharomyces cerevisiae, focussing on the 800 basepairs immediately upstream of each gene's translation start site (the upstream control region (UCR)). RESULTS: We successfully identify regulatory motifs th …
We apply this method to a publicly available dataset of the yeast Saccharomyces cerevisiae, focussing on the 800 basepairs immediately upstr …
Normalization of ChIP-seq data with control.
Liang K, Keleş S. Liang K, et al. Among authors: keles s. BMC Bioinformatics. 2012 Aug 10;13:199. doi: 10.1186/1471-2105-13-199. BMC Bioinformatics. 2012. PMID: 22883957 Free PMC article.
Statistical analysis of ChIP-seq data with MOSAiCS.
Sun G, Chung D, Liang K, Keleş S. Sun G, et al. Among authors: keles s. Methods Mol Biol. 2013;1038:193-212. doi: 10.1007/978-1-62703-514-9_12. Methods Mol Biol. 2013. PMID: 23872977
400 results