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MCMC_CLIB-an advanced MCMC sampling package for ODE models.
Kramer A, Stathopoulos V, Girolami M, Radde N. Kramer A, et al. Bioinformatics. 2014 Oct 15;30(20):2991-2. doi: 10.1093/bioinformatics/btu429. Epub 2014 Jul 7. Bioinformatics. 2014. PMID: 25005749
AVAILABILITY AND IMPLEMENTATION: The source code and binary files are freely available for download at http://a-kramer.github.io/mcmc_clib/. This also includes example files and data. A detailed documentation, an example model and user manual are provided wit …
AVAILABILITY AND IMPLEMENTATION: The source code and binary files are freely available for download at http://a-kramer.github. …
Hamiltonian Monte Carlo methods for efficient parameter estimation in steady state dynamical systems.
Kramer A, Calderhead B, Radde N. Kramer A, et al. BMC Bioinformatics. 2014 Jul 28;15(1):253. doi: 10.1186/1471-2105-15-253. BMC Bioinformatics. 2014. PMID: 25066046 Free PMC article.
RESULTS: We show how state of the art Hamiltonian Monte Carlo methods may be significantly improved for steady state dynamical models. We present a novel approach for efficiently calculating the required geometric quantities by tracking steady states across the Hamiltonian …
RESULTS: We show how state of the art Hamiltonian Monte Carlo methods may be significantly improved for steady state dynamical models. We pr …
iVUN: interactive Visualization of Uncertain biochemical reaction Networks.
Vehlow C, Hasenauer J, Kramer A, Raue A, Hug S, Timmer J, Radde N, Theis FJ, Weiskopf D. Vehlow C, et al. Among authors: kramer a. BMC Bioinformatics. 2013;14 Suppl 19(Suppl 19):S2. doi: 10.1186/1471-2105-14-S19-S2. Epub 2013 Nov 12. BMC Bioinformatics. 2013. PMID: 24564335 Free PMC article.
Understanding Cognitive Aging Through White Matter: A Fixel-Based Analysis.
Tinney EM, Warren AEL, Ai M, Morris TP, O'Brien A, Odom H, Sutton BP, Jain S, Kang C, Huang H, Wan L, Oberlin L, Burns JM, Vidoni ED, McAuley E, Kramer AF, Erickson KI, Hillman CH. Tinney EM, et al. Among authors: kramer af. Hum Brain Mapp. 2024 Dec 15;45(18):e70121. doi: 10.1002/hbm.70121. Hum Brain Mapp. 2024. PMID: 39720841 Free PMC article.
Artificial intelligence in risk prediction and diagnosis of vertebral fractures.
Namireddy SR, Gill SS, Peerbhai A, Kamath AG, Ramsay DSC, Ponniah HS, Salih A, Jankovic D, Kalasauskas D, Neuhoff J, Kramer A, Russo S, Thavarajasingam SG. Namireddy SR, et al. Among authors: kramer a. Sci Rep. 2024 Dec 19;14(1):30560. doi: 10.1038/s41598-024-75628-2. Sci Rep. 2024. PMID: 39702597 Free PMC article.
3,089 results