Liu L - Search Results

1

From miRNA regulation to miRNA-TF co-regulation: computational approaches and challenges.

Le TD, Liu L, Zhang J, Liu B, Li J. Le TD, et al. Among authors: liu l, liu b. Brief Bioinform. 2015 May;16(3):475-96. doi: 10.1093/bib/bbu023. Epub 2014 Jul 12. Brief Bioinform. 2015. PMID: 25016381 Review.

2

Computational methods for identifying miRNA sponge interactions.

Le TD, Zhang J, Liu L, Li J. Le TD, et al. Among authors: liu l. Brief Bioinform. 2017 Jul 1;18(4):577-590. doi: 10.1093/bib/bbw042. Brief Bioinform. 2017. PMID: 27273287 Review.

3

Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer.

Zhang J, Le TD, Liu L, Li J. Zhang J, et al. Among authors: liu l. BMC Bioinformatics. 2017 May 8;18(1):243. doi: 10.1186/s12859-017-1672-2. BMC Bioinformatics. 2017. PMID: 28482794 Free PMC article.

4

Inferring and analyzing module-specific lncRNA-mRNA causal regulatory networks in human cancer.

Zhang J, Le TD, Liu L, Li J. Zhang J, et al. Among authors: liu l. Brief Bioinform. 2019 Jul 19;20(4):1403-1419. doi: 10.1093/bib/bby008. Brief Bioinform. 2019. PMID: 29401217 Review.

5

Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data.

Zhang J, Liu L, Xu T, Zhang W, Zhao C, Li S, Li J, Rao N, Le TD. Zhang J, et al. Among authors: liu l. BMC Bioinformatics. 2021 Dec 2;22(1):578. doi: 10.1186/s12859-021-04498-6. BMC Bioinformatics. 2021. PMID: 34856921 Free PMC article.

6

A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.

Zhang J, Le TD, Liu L, He J, Li J. Zhang J, et al. Among authors: liu l. Gene. 2016 Feb 10;577(1):55-64. doi: 10.1016/j.gene.2015.11.023. Epub 2015 Nov 27. Gene. 2016. PMID: 26611531

7

Identification of miRNA-mRNA regulatory modules by exploring collective group relationships.

Masud Karim SM, Liu L, Le TD, Li J. Masud Karim SM, et al. Among authors: liu l. BMC Genomics. 2016 Jan 11;17 Suppl 1(Suppl 1):7. doi: 10.1186/s12864-015-2300-z. BMC Genomics. 2016. PMID: 26817421 Free PMC article.

8

Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data.

Xu T, Le TD, Liu L, Wang R, Sun B, Li J. Xu T, et al. Among authors: liu l. PLoS One. 2016 Apr 1;11(4):e0152792. doi: 10.1371/journal.pone.0152792. eCollection 2016. PLoS One. 2016. PMID: 27035433 Free PMC article.

9

Predicting miRNA Targets by Integrating Gene Regulatory Knowledge with Expression Profiles.

Zhang W, Le TD, Liu L, Zhou ZH, Li J. Zhang W, et al. Among authors: liu l. PLoS One. 2016 Apr 11;11(4):e0152860. doi: 10.1371/journal.pone.0152860. eCollection 2016. PLoS One. 2016. PMID: 27064982 Free PMC article.

10

Identifying miRNA sponge modules using biclustering and regulatory scores.

Zhang J, Le TD, Liu L, Li J. Zhang J, et al. Among authors: liu l. BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):44. doi: 10.1186/s12859-017-1467-5. BMC Bioinformatics. 2017. PMID: 28361682 Free PMC article.

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