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Analysis of the tryptic search space in UniProt databases.
Alpi E, Griss J, da Silva AW, Bely B, Antunes R, Zellner H, Ríos D, O'Donovan C, Vizcaíno JA, Martin MJ. Alpi E, et al. Among authors: vizcaino ja. Proteomics. 2015 Jan;15(1):48-57. doi: 10.1002/pmic.201400227. Epub 2014 Dec 3. Proteomics. 2015. PMID: 25307260 Free PMC article.
ProForma: A Standard Proteoform Notation.
LeDuc RD, Schwämmle V, Shortreed MR, Cesnik AJ, Solntsev SK, Shaw JB, Martin MJ, Vizcaino JA, Alpi E, Danis P, Kelleher NL, Smith LM, Ge Y, Agar JN, Chamot-Rooke J, Loo JA, Pasa-Tolic L, Tsybin YO. LeDuc RD, et al. Among authors: vizcaino ja. J Proteome Res. 2018 Mar 2;17(3):1321-1325. doi: 10.1021/acs.jproteome.7b00851. Epub 2018 Feb 14. J Proteome Res. 2018. PMID: 29397739 Free PMC article.
A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome.
Ramsbottom KA, Prakash A, Riverol YP, Camacho OM, Sun Z, Kundu DJ, Bowler-Barnett E, Martin M, Fan J, Chebotarov D, McNally KL, Deutsch EW, Vizcaíno JA, Jones AR. Ramsbottom KA, et al. Among authors: vizcaino ja. bioRxiv [Preprint]. 2023 Nov 17:2023.11.17.567512. doi: 10.1101/2023.11.17.567512. bioRxiv. 2023. Update in: J Proteome Res. 2024 Jul 5;23(7):2518-2531. doi: 10.1021/acs.jproteome.4c00187 PMID: 38014076 Free PMC article. Updated. Preprint.
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.
Thakur M, Buniello A, Brooksbank C, Gurwitz KT, Hall M, Hartley M, Hulcoop DG, Leach AR, Marques D, Martin M, Mithani A, McDonagh EM, Mutasa-Gottgens E, Ochoa D, Perez-Riverol Y, Stephenson J, Varadi M, Velankar S, Vizcaino JA, Witham R, McEntyre J. Thakur M, et al. Among authors: vizcaino ja. Nucleic Acids Res. 2024 Jan 5;52(D1):D10-D17. doi: 10.1093/nar/gkad1088. Nucleic Acids Res. 2024. PMID: 38015445 Free PMC article. Review.
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome.
Ramsbottom KA, Prakash A, Perez-Riverol Y, Camacho OM, Sun Z, Kundu DJ, Bowler-Barnett E, Martin M, Fan J, Chebotarov D, McNally KL, Deutsch EW, Vizcaíno JA, Jones AR. Ramsbottom KA, et al. Among authors: vizcaino ja. J Proteome Res. 2024 Jul 5;23(7):2518-2531. doi: 10.1021/acs.jproteome.4c00187. Epub 2024 May 29. J Proteome Res. 2024. PMID: 38810119 Free PMC article.
171 results