Andrews SR - Search Results

1

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.

Smallwood SA, Lee HJ, Angermueller C, Krueger F, Saadeh H, Peat J, Andrews SR, Stegle O, Reik W, Kelsey G. Smallwood SA, et al. Among authors: andrews sr. Nat Methods. 2014 Aug;11(8):817-820. doi: 10.1038/nmeth.3035. Epub 2014 Jul 20. Nat Methods. 2014. PMID: 25042786 Free PMC article.

2

Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes.

Farthing CR, Ficz G, Ng RK, Chan CF, Andrews S, Dean W, Hemberger M, Reik W. Farthing CR, et al. PLoS Genet. 2008 Jun 27;4(6):e1000116. doi: 10.1371/journal.pgen.1000116. PLoS Genet. 2008. PMID: 18584034 Free PMC article.

3

Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

Popp C, Dean W, Feng S, Cokus SJ, Andrews S, Pellegrini M, Jacobsen SE, Reik W. Popp C, et al. Nature. 2010 Feb 25;463(7284):1101-5. doi: 10.1038/nature08829. Nature. 2010. PMID: 20098412 Free PMC article.

4

Dynamic stage-specific changes in imprinted differentially methylated regions during early mammalian development and prevalence of non-CpG methylation in oocytes.

Tomizawa S, Kobayashi H, Watanabe T, Andrews S, Hata K, Kelsey G, Sasaki H. Tomizawa S, et al. Development. 2011 Mar;138(5):811-20. doi: 10.1242/dev.061416. Epub 2011 Jan 19. Development. 2011. PMID: 21247965 Free PMC article.

5

Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling.

Krueger F, Andrews SR, Osborne CS. Krueger F, et al. Among authors: andrews sr. PLoS One. 2011 Jan 28;6(1):e16607. doi: 10.1371/journal.pone.0016607. PLoS One. 2011. PMID: 21305042 Free PMC article.

6

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W. Ficz G, et al. Nature. 2011 May 19;473(7347):398-402. doi: 10.1038/nature10008. Epub 2011 Apr 3. Nature. 2011. PMID: 21460836

7

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

Krueger F, Andrews SR. Krueger F, et al. Among authors: andrews sr. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: 10.1093/bioinformatics/btr167. Epub 2011 Apr 14. Bioinformatics. 2011. PMID: 21493656 Free PMC article.

8

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos.

Smallwood SA, Tomizawa S, Krueger F, Ruf N, Carli N, Segonds-Pichon A, Sato S, Hata K, Andrews SR, Kelsey G. Smallwood SA, et al. Among authors: andrews sr. Nat Genet. 2011 Jun 26;43(8):811-4. doi: 10.1038/ng.864. Nat Genet. 2011. PMID: 21706000 Free PMC article.

9

DNA methylome analysis using short bisulfite sequencing data.

Krueger F, Kreck B, Franke A, Andrews SR. Krueger F, et al. Among authors: andrews sr. Nat Methods. 2012 Jan 30;9(2):145-51. doi: 10.1038/nmeth.1828. Nat Methods. 2012. PMID: 22290186 Review.

10

DNA methylation profiles define stem cell identity and reveal a tight embryonic-extraembryonic lineage boundary.

Senner CE, Krueger F, Oxley D, Andrews S, Hemberger M. Senner CE, et al. Stem Cells. 2012 Dec;30(12):2732-45. doi: 10.1002/stem.1249. Stem Cells. 2012. PMID: 23034951

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