Perkins R - Search Results

1

Discovering functional modules by topic modeling RNA-Seq based toxicogenomic data.

Yu K, Gong B, Lee M, Liu Z, Xu J, Perkins R, Tong W. Yu K, et al. Among authors: perkins r. Chem Res Toxicol. 2014 Sep 15;27(9):1528-36. doi: 10.1021/tx500148n. Epub 2014 Aug 14. Chem Res Toxicol. 2014. PMID: 25083553

2

Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys.

Su Z, Li Z, Chen T, Li QZ, Fang H, Ding D, Ge W, Ning B, Hong H, Perkins RG, Tong W, Shi L. Su Z, et al. Chem Res Toxicol. 2011 Sep 19;24(9):1486-93. doi: 10.1021/tx200103b. Epub 2011 Aug 23. Chem Res Toxicol. 2011. PMID: 21834575

3

Gene expression profile exploration of a large dataset on chronic fatigue syndrome.

Fang H, Xie Q, Boneva R, Fostel J, Perkins R, Tong W. Fang H, et al. Among authors: perkins r. Pharmacogenomics. 2006 Apr;7(3):429-40. doi: 10.2217/14622416.7.3.429. Pharmacogenomics. 2006. PMID: 16610953

4

Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay.

Fan X, Fang H, Hong H, Perkins R, Shi L, Tong W. Fan X, et al. Among authors: perkins r. Anal Biochem. 2009 Feb 15;385(2):203-7. doi: 10.1016/j.ab.2008.11.019. Epub 2008 Dec 6. Anal Biochem. 2009. PMID: 19059192

5

Selecting a single model or combining multiple models for microarray-based classifier development?--a comparative analysis based on large and diverse datasets generated from the MAQC-II project.

Chen M, Shi L, Kelly R, Perkins R, Fang H, Tong W. Chen M, et al. Among authors: perkins r. BMC Bioinformatics. 2011 Oct 18;12 Suppl 10(Suppl 10):S3. doi: 10.1186/1471-2105-12-S10-S3. BMC Bioinformatics. 2011. PMID: 22166133 Free PMC article.

6

Rat α-Fetoprotein binding affinities of a large set of structurally diverse chemicals elucidated the relationships between structures and binding affinities.

Hong H, Branham WS, Dial SL, Moland CL, Fang H, Shen J, Perkins R, Sheehan D, Tong W. Hong H, et al. Among authors: perkins r. Chem Res Toxicol. 2012 Nov 19;25(11):2553-66. doi: 10.1021/tx3003406. Epub 2012 Oct 12. Chem Res Toxicol. 2012. PMID: 23013281

7

Versatility or promiscuity: the estrogen receptors, control of ligand selectivity and an update on subtype selective ligands.

Ng HW, Perkins R, Tong W, Hong H. Ng HW, et al. Among authors: perkins r. Int J Environ Res Public Health. 2014 Aug 26;11(9):8709-42. doi: 10.3390/ijerph110908709. Int J Environ Res Public Health. 2014. PMID: 25162709 Free PMC article. Review.

8

Estrogenic activity data extraction and in silico prediction show the endocrine disruption potential of bisphenol A replacement compounds.

Ng HW, Shu M, Luo H, Ye H, Ge W, Perkins R, Tong W, Hong H. Ng HW, et al. Among authors: perkins r. Chem Res Toxicol. 2015 Sep 21;28(9):1784-95. doi: 10.1021/acs.chemrestox.5b00243. Epub 2015 Sep 2. Chem Res Toxicol. 2015. PMID: 26308263

9

A novel procedure on next generation sequencing data analysis using text mining algorithm.

Zhao W, Chen JJ, Perkins R, Wang Y, Liu Z, Hong H, Tong W, Zou W. Zhao W, et al. Among authors: perkins r. BMC Bioinformatics. 2016 May 13;17(1):213. doi: 10.1186/s12859-016-1075-9. BMC Bioinformatics. 2016. PMID: 27177941 Free PMC article.

10

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Hua… See abstract for full author list ➔ Shi L, et al. Among authors: perkins rg. Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30. Nat Biotechnol. 2010. PMID: 20676074 Free PMC article.

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