Liu XS - Search Results

1

MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes.

Zheng X, Zhao Q, Wu HJ, Li W, Wang H, Meyer CA, Qin QA, Xu H, Zang C, Jiang P, Li F, Hou Y, He J, Wang J, Wang J, Zhang P, Zhang Y, Liu XS. Zheng X, et al. Among authors: liu xs. Genome Biol. 2014 Aug 7;15(8):419. doi: 10.1186/s13059-014-0419-x. Genome Biol. 2014. PMID: 25103624 Free PMC article.

2

MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data.

Chen Y, Meyer CA, Liu T, Li W, Liu JS, Liu XS. Chen Y, et al. Among authors: liu js, liu xs, liu t. Genome Biol. 2011;12(2):R11. doi: 10.1186/gb-2011-12-2-r11. Epub 2011 Feb 1. Genome Biol. 2011. PMID: 21284836 Free PMC article.

3

Inference of transcriptional regulation in cancers.

Jiang P, Freedman ML, Liu JS, Liu XS. Jiang P, et al. Among authors: liu js, liu xs. Proc Natl Acad Sci U S A. 2015 Jun 23;112(25):7731-6. doi: 10.1073/pnas.1424272112. Epub 2015 Jun 8. Proc Natl Acad Sci U S A. 2015. PMID: 26056275 Free PMC article.

4

Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells.

Brodsky AS, Meyer CA, Swinburne IA, Hall G, Keenan BJ, Liu XS, Fox EA, Silver PA. Brodsky AS, et al. Among authors: liu xs. Genome Biol. 2005;6(8):R64. doi: 10.1186/gb-2005-6-8-r64. Epub 2005 Jul 15. Genome Biol. 2005. PMID: 16086846 Free PMC article.

5

CRISPR-DO for genome-wide CRISPR design and optimization.

Ma J, Köster J, Qin Q, Hu S, Li W, Chen C, Cao Q, Wang J, Mei S, Liu Q, Xu H, Liu XS. Ma J, et al. Among authors: liu q, liu xs. Bioinformatics. 2016 Nov 1;32(21):3336-3338. doi: 10.1093/bioinformatics/btw476. Epub 2016 Jul 10. Bioinformatics. 2016. PMID: 27402906 Free PMC article.

6

Inactivation of the PBRM1 tumor suppressor gene amplifies the HIF-response in VHL-/- clear cell renal carcinoma.

Gao W, Li W, Xiao T, Liu XS, Kaelin WG Jr. Gao W, et al. Among authors: liu xs. Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1027-1032. doi: 10.1073/pnas.1619726114. Epub 2017 Jan 12. Proc Natl Acad Sci U S A. 2017. PMID: 28082722 Free PMC article.

7

A comprehensive view of nuclear receptor cancer cistromes.

Tang Q, Chen Y, Meyer C, Geistlinger T, Lupien M, Wang Q, Liu T, Zhang Y, Brown M, Liu XS. Tang Q, et al. Among authors: liu xs, liu t. Cancer Res. 2011 Nov 15;71(22):6940-7. doi: 10.1158/0008-5472.CAN-11-2091. Epub 2011 Sep 22. Cancer Res. 2011. PMID: 21940749 Free PMC article.

8

Identifying ChIP-seq enrichment using MACS.

Feng J, Liu T, Qin B, Zhang Y, Liu XS. Feng J, et al. Among authors: liu xs, liu t. Nat Protoc. 2012 Sep;7(9):1728-40. doi: 10.1038/nprot.2012.101. Epub 2012 Aug 30. Nat Protoc. 2012. PMID: 22936215 Free PMC article.

9

Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library.

Zhu S, Li W, Liu J, Chen CH, Liao Q, Xu P, Xu H, Xiao T, Cao Z, Peng J, Yuan P, Brown M, Liu XS, Wei W. Zhu S, et al. Among authors: liu j, liu xs. Nat Biotechnol. 2016 Dec;34(12):1279-1286. doi: 10.1038/nbt.3715. Epub 2016 Oct 31. Nat Biotechnol. 2016. PMID: 27798563 Free PMC article.

10

SETDB1 modulates PRC2 activity at developmental genes independently of H3K9 trimethylation in mouse ES cells.

Fei Q, Yang X, Jiang H, Wang Q, Yu Y, Yu Y, Yi W, Zhou S, Chen T, Lu C, Atadja P, Liu XS, Li E, Zhang Y, Shou J. Fei Q, et al. Among authors: liu xs. Genome Res. 2015 Sep;25(9):1325-35. doi: 10.1101/gr.177576.114. Epub 2015 Jul 9. Genome Res. 2015. PMID: 26160163 Free PMC article.

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