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Orthology detection combining clustering and synteny for very large datasets.
Lechner M, Hernandez-Rosales M, Doerr D, Wieseke N, Thévenin A, Stoye J, Hartmann RK, Prohaska SJ, Stadler PF. Lechner M, et al. Among authors: doerr d. PLoS One. 2014 Aug 19;9(8):e105015. doi: 10.1371/journal.pone.0105015. eCollection 2014. PLoS One. 2014. PMID: 25137074 Free PMC article.
Gene family assignment-free comparative genomics.
Doerr D, Thévenin A, Stoye J. Doerr D, et al. BMC Bioinformatics. 2012;13 Suppl 19(Suppl 19):S3. doi: 10.1186/1471-2105-13-S19-S3. Epub 2012 Dec 19. BMC Bioinformatics. 2012. PMID: 23281826 Free PMC article.
Family-Free Genome Comparison.
Doerr D, Feijão P, Stoye J. Doerr D, et al. Methods Mol Biol. 2018;1704:331-342. doi: 10.1007/978-1-4939-7463-4_12. Methods Mol Biol. 2018. PMID: 29277872
Computing the Rearrangement Distance of Natural Genomes.
Bohnenkämper L, Braga MDV, Doerr D, Stoye J. Bohnenkämper L, et al. Among authors: doerr d. J Comput Biol. 2021 Apr;28(4):410-431. doi: 10.1089/cmb.2020.0434. Epub 2020 Dec 30. J Comput Biol. 2021. PMID: 33393848 Free PMC article.
Family-Free Genome Comparison.
Braga MDV, Doerr D, Rubert DP, Stoye J. Braga MDV, et al. Among authors: doerr d. Methods Mol Biol. 2024;2802:57-72. doi: 10.1007/978-1-0716-3838-5_3. Methods Mol Biol. 2024. PMID: 38819556
83 results