Dopazo J - Search Results

1

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

Tárraga J, Arnau V, Martínez H, Moreno R, Cazorla D, Salavert-Torres J, Blanquer-Espert I, Dopazo J, Medina I. Tárraga J, et al. Among authors: dopazo j. Bioinformatics. 2014 Dec 1;30(23):3396-8. doi: 10.1093/bioinformatics/btu553. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143289 Free PMC article.

2

Highly specific and accurate selection of siRNAs for high-throughput functional assays.

Santoyo J, Vaquerizas JM, Dopazo J. Santoyo J, et al. Among authors: dopazo j. Bioinformatics. 2005 Apr 15;21(8):1376-82. doi: 10.1093/bioinformatics/bti196. Epub 2004 Dec 10. Bioinformatics. 2005. PMID: 15591357

3

Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information.

Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Al-Shahrour F, et al. Among authors: dopazo j. Bioinformatics. 2005 Jul 1;21(13):2988-93. doi: 10.1093/bioinformatics/bti457. Epub 2005 Apr 19. Bioinformatics. 2005. PMID: 15840702

4

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Al-Shahrour F, Minguez P, Tárraga J, Montaner D, Alloza E, Vaquerizas JM, Conde L, Blaschke C, Vera J, Dopazo J. Al-Shahrour F, et al. Among authors: dopazo j. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W472-6. doi: 10.1093/nar/gkl172. Nucleic Acids Res. 2006. PMID: 16845052 Free PMC article.

5

Next station in microarray data analysis: GEPAS.

Montaner D, Tárraga J, Huerta-Cepas J, Burguet J, Vaquerizas JM, Conde L, Minguez P, Vera J, Mukherjee S, Valls J, Pujana MA, Alloza E, Herrero J, Al-Shahrour F, Dopazo J. Montaner D, et al. Among authors: dopazo j. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W486-91. doi: 10.1093/nar/gkl197. Nucleic Acids Res. 2006. PMID: 16845056 Free PMC article.

6

Prophet, a web-based tool for class prediction using microarray data.

Medina I, Montaner D, Tárraga J, Dopazo J. Medina I, et al. Among authors: dopazo j. Bioinformatics. 2007 Feb 1;23(3):390-1. doi: 10.1093/bioinformatics/btl602. Epub 2006 Nov 30. Bioinformatics. 2007. PMID: 17138587

7

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.

Tárraga J, Medina I, Arbiza L, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Tárraga J, et al. Among authors: dopazo j, dopazo h. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W38-42. doi: 10.1093/nar/gkm224. Epub 2007 Apr 22. Nucleic Acids Res. 2007. PMID: 17452346 Free PMC article.

8

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Conde L, Montaner D, Burguet-Castell J, Tárraga J, Medina I, Al-Shahrour F, Dopazo J. Conde L, et al. Among authors: dopazo j. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W81-5. doi: 10.1093/nar/gkm257. Epub 2007 Apr 27. Nucleic Acids Res. 2007. PMID: 17468499 Free PMC article.

9

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J. Al-Shahrour F, et al. Among authors: dopazo j. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W91-6. doi: 10.1093/nar/gkm260. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478504 Free PMC article.

10

Functional profiling and gene expression analysis of chromosomal copy number alterations.

Conde L, Montaner D, Burguet-Castell J, Tárraga J, Al-Shahrour F, Dopazo J. Conde L, et al. Among authors: dopazo j. Bioinformation. 2007 Apr 10;1(10):432-5. doi: 10.6026/97320630001432. Bioinformation. 2007. PMID: 17597935 Free PMC article.

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