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PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
Frankhouser DE, Murphy M, Blachly JS, Park J, Zoller MW, Ganbat JO, Curfman J, Byrd JC, Lin S, Marcucci G, Yan P, Bundschuh R. Frankhouser DE, et al. Among authors: murphy m. Bioinformatics. 2014 Dec 15;30(24):3567-74. doi: 10.1093/bioinformatics/btu583. Epub 2014 Aug 31. Bioinformatics. 2014. PMID: 25178460 Free PMC article.
Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia.
Yan P, Frankhouser D, Murphy M, Tam HH, Rodriguez B, Curfman J, Trimarchi M, Geyer S, Wu YZ, Whitman SP, Metzeler K, Walker A, Klisovic R, Jacob S, Grever MR, Byrd JC, Bloomfield CD, Garzon R, Blum W, Caligiuri MA, Bundschuh R, Marcucci G. Yan P, et al. Among authors: murphy m. Blood. 2012 Sep 20;120(12):2466-74. doi: 10.1182/blood-2012-05-429175. Epub 2012 Jul 11. Blood. 2012. PMID: 22786882 Free PMC article.
Methods for high-throughput MethylCap-Seq data analysis.
Rodriguez BA, Frankhouser D, Murphy M, Trimarchi M, Tam HH, Curfman J, Huang R, Chan MW, Lai HC, Parikh D, Ball B, Schwind S, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez BA, et al. Among authors: murphy m. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2164-13-S6-S14. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134780 Free PMC article.
Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes.
Trimarchi MP, Murphy M, Frankhouser D, Rodriguez BA, Curfman J, Marcucci G, Yan P, Bundschuh R. Trimarchi MP, et al. Among authors: murphy m. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2164-13-S8-S6. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281662 Free PMC article.
A Scalable, Flexible Workflow for MethylCap-Seq Data Analysis.
Rodriguez B, Tam HH, Frankhouser D, Trimarchi M, Murphy M, Kuo C, Parikh D, Ball B, Schwind S, Curfman J, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez B, et al. Among authors: murphy m. IEEE Int Workshop Genomic Signal Process Stat. 2011:1-4. doi: 10.1109/GENSiPS.2011.6169426. IEEE Int Workshop Genomic Signal Process Stat. 2011. PMID: 22484542 Free PMC article.
Tcl1 protein functions as an inhibitor of de novo DNA methylation in B-cell chronic lymphocytic leukemia (CLL).
Palamarchuk A, Yan PS, Zanesi N, Wang L, Rodrigues B, Murphy M, Balatti V, Bottoni A, Nazaryan N, Alder H, Rassenti L, Kipps TJ, Freitas M, Croce CM, Pekarsky Y. Palamarchuk A, et al. Among authors: murphy m. Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2555-60. doi: 10.1073/pnas.1200003109. Epub 2012 Jan 30. Proc Natl Acad Sci U S A. 2012. PMID: 22308499 Free PMC article.
The Generating Excellent Nutrition in UK Schools (GENIUS) network: working towards a more health-promoting food and nutrition system in UK schools.
Woodside JV, O'Kane N, Pallan M, Evans C, Defeyter G, Brownlee I, Murphy M, Parnham JC, Lalli GS, Bryant M, McKinley MC, Gallagher AM, Schliemann D, McConnell C, Olgacher D, Spence S; GENIUS network. Woodside JV, et al. Among authors: murphy m. Proc Nutr Soc. 2024 Nov 18:1-37. doi: 10.1017/S0029665124007560. Online ahead of print. Proc Nutr Soc. 2024. PMID: 39552357 Review.
Does implementation of office based addiction treatment by a nurse care manager increase the duration of OUD treatment in primary care? A secondary analysis of the PROUD randomized control trial.
Weinstein ZM, Yu O, Wartko PD, Samet JH, Bobb JF, Braciszewski JM, Arnsten JH, Murphy MT, Horigian VE, Stotts AL, Beers D, Bradley K. Weinstein ZM, et al. Among authors: murphy mt. Drug Alcohol Depend. 2024 Nov 10;265:112497. doi: 10.1016/j.drugalcdep.2024.112497. Online ahead of print. Drug Alcohol Depend. 2024. PMID: 39550823
7,727 results