van Bakel H - Search Results

1

Determination and inference of eukaryotic transcription factor sequence specificity.

Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, Walhout AJM, Bouget FY, Ratsch G, Larrondo LF, Ecker JR, Hughes TR. Weirauch MT, et al. Among authors: van bakel h. Cell. 2014 Sep 11;158(6):1431-1443. doi: 10.1016/j.cell.2014.08.009. Cell. 2014. PMID: 25215497 Free PMC article.

2

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.

Badis G, Chan ET, van Bakel H, Pena-Castillo L, Tillo D, Tsui K, Carlson CD, Gossett AJ, Hasinoff MJ, Warren CL, Gebbia M, Talukder S, Yang A, Mnaimneh S, Terterov D, Coburn D, Li Yeo A, Yeo ZX, Clarke ND, Lieb JD, Ansari AZ, Nislow C, Hughes TR. Badis G, et al. Among authors: van bakel h. Mol Cell. 2008 Dec 26;32(6):878-87. doi: 10.1016/j.molcel.2008.11.020. Mol Cell. 2008. PMID: 19111667 Free PMC article.

3

Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression.

Fillingham J, Kainth P, Lambert JP, van Bakel H, Tsui K, Peña-Castillo L, Nislow C, Figeys D, Hughes TR, Greenblatt J, Andrews BJ. Fillingham J, et al. Among authors: van bakel h. Mol Cell. 2009 Aug 14;35(3):340-51. doi: 10.1016/j.molcel.2009.06.023. Mol Cell. 2009. PMID: 19683497 Free article.

4

A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300.

Khanna M, Van Bakel H, Tang X, Calarco JA, Babak T, Guo G, Emili A, Greenblatt JF, Hughes TR, Krogan NJ, Blencowe BJ. Khanna M, et al. Among authors: van bakel h. RNA. 2009 Dec;15(12):2174-85. doi: 10.1261/rna.1790509. Epub 2009 Sep 29. RNA. 2009. PMID: 19789211 Free PMC article.

5

Establishing legitimacy and function in the new transcriptome.

van Bakel H, Hughes TR. van Bakel H, et al. Brief Funct Genomic Proteomic. 2009 Nov;8(6):424-36. doi: 10.1093/bfgp/elp037. Brief Funct Genomic Proteomic. 2009. PMID: 19833698 Review.

6

Most "dark matter" transcripts are associated with known genes.

van Bakel H, Nislow C, Blencowe BJ, Hughes TR. van Bakel H, et al. PLoS Biol. 2010 May 18;8(5):e1000371. doi: 10.1371/journal.pbio.1000371. PLoS Biol. 2010. PMID: 20502517 Free PMC article.

7

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays.

Lam KN, van Bakel H, Cote AG, van der Ven A, Hughes TR. Lam KN, et al. Among authors: van bakel h, van der ven a. Nucleic Acids Res. 2011 Jun;39(11):4680-90. doi: 10.1093/nar/gkq1303. Epub 2011 Feb 14. Nucleic Acids Res. 2011. PMID: 21321018 Free PMC article.

8

Interactions of transcription factors with chromatin.

van Bakel H. van Bakel H. Subcell Biochem. 2011;52:223-59. doi: 10.1007/978-90-481-9069-0_11. Subcell Biochem. 2011. PMID: 21557086

9

The draft genome and transcriptome of Cannabis sativa.

van Bakel H, Stout JM, Cote AG, Tallon CM, Sharpe AG, Hughes TR, Page JE. van Bakel H, et al. Genome Biol. 2011 Oct 20;12(10):R102. doi: 10.1186/gb-2011-12-10-r102. Genome Biol. 2011. PMID: 22014239 Free PMC article.

10

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription.

van Bakel H, Tsui K, Gebbia M, Mnaimneh S, Hughes TR, Nislow C. van Bakel H, et al. PLoS Genet. 2013 May;9(5):e1003479. doi: 10.1371/journal.pgen.1003479. Epub 2013 May 2. PLoS Genet. 2013. PMID: 23658529 Free PMC article.

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