Xie X - Search Results

1

Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program.

Chiu WT, Charney Le R, Blitz IL, Fish MB, Li Y, Biesinger J, Xie X, Cho KW. Chiu WT, et al. Among authors: xie x. Development. 2014 Dec;141(23):4537-47. doi: 10.1242/dev.107227. Epub 2014 Oct 30. Development. 2014. PMID: 25359723 Free PMC article.

2

Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy.

Seo YK, Jeon TI, Chong HK, Biesinger J, Xie X, Osborne TF. Seo YK, et al. Among authors: xie x. Cell Metab. 2011 Apr 6;13(4):367-375. doi: 10.1016/j.cmet.2011.03.005. Cell Metab. 2011. PMID: 21459322 Free PMC article.

3

AREM: aligning short reads from ChIP-sequencing by expectation maximization.

Newkirk D, Biesinger J, Chon A, Yokomori K, Xie X. Newkirk D, et al. Among authors: xie x. J Comput Biol. 2011 Nov;18(11):1495-505. doi: 10.1089/cmb.2011.0185. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035330 Free PMC article.

4

Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR.

Chong HK, Biesinger J, Seo YK, Xie X, Osborne TF. Chong HK, et al. Among authors: xie x. BMC Genomics. 2012 Feb 1;13:51. doi: 10.1186/1471-2164-13-51. BMC Genomics. 2012. PMID: 22296850 Free PMC article.

5

Transcriptome-wide analyses of CstF64-RNA interactions in global regulation of mRNA alternative polyadenylation.

Yao C, Biesinger J, Wan J, Weng L, Xing Y, Xie X, Shi Y. Yao C, et al. Among authors: xie x. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18773-8. doi: 10.1073/pnas.1211101109. Epub 2012 Oct 29. Proc Natl Acad Sci U S A. 2012. PMID: 23112178 Free PMC article.

6

Discovering and mapping chromatin states using a tree hidden Markov model.

Biesinger J, Wang Y, Xie X. Biesinger J, et al. Among authors: xie x. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S4. doi: 10.1186/1471-2105-14-S5-S4. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23734743 Free PMC article.

7

A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues.

Li Y, Xie X. Li Y, et al. Among authors: xie x. BMC Bioinformatics. 2013;14 Suppl 5(Suppl 5):S11. doi: 10.1186/1471-2105-14-S5-S11. Epub 2013 Apr 10. BMC Bioinformatics. 2013. PMID: 23735186 Free PMC article.

8

Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.

Blitz IL, Biesinger J, Xie X, Cho KW. Blitz IL, et al. Among authors: xie x. Genesis. 2013 Dec;51(12):827-34. doi: 10.1002/dvg.22719. Epub 2013 Nov 21. Genesis. 2013. PMID: 24123579 Free PMC article.

9

Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns.

Zheng Z, Christley S, Chiu WT, Blitz IL, Xie X, Cho KW, Nie Q. Zheng Z, et al. Among authors: xie x. BMC Syst Biol. 2014 Jan 8;8:3. doi: 10.1186/1752-0509-8-3. BMC Syst Biol. 2014. PMID: 24397936 Free PMC article.

10

Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer.

Watanabe K, Biesinger J, Salmans ML, Roberts BS, Arthur WT, Cleary M, Andersen B, Xie X, Dai X. Watanabe K, et al. Among authors: xie x. PLoS One. 2014 Mar 20;9(3):e92317. doi: 10.1371/journal.pone.0092317. eCollection 2014. PLoS One. 2014. PMID: 24651522 Free PMC article.

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