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Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.
Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, Heintz-Buschart A, Wampach L, Liu CM, Price LB, Gillece JD, Guignard C, Schupp JM, Vlassis N, Baliga NS, Moritz RL, Keim PS, Wilmes P. Muller EE, et al. Among authors: schupp jm. Nat Commun. 2014 Nov 26;5:5603. doi: 10.1038/ncomms6603. Nat Commun. 2014. PMID: 25424998 Free PMC article.
Genome sequence of "Candidatus Microthrix parvicella" Bio17-1, a long-chain-fatty-acid-accumulating filamentous actinobacterium from a biological wastewater treatment plant.
Muller EE, Pinel N, Gillece JD, Schupp JM, Price LB, Engelthaler DM, Levantesi C, Tandoi V, Luong K, Baliga NS, Korlach J, Keim PS, Wilmes P. Muller EE, et al. Among authors: schupp jm. J Bacteriol. 2012 Dec;194(23):6670-1. doi: 10.1128/JB.01765-12. J Bacteriol. 2012. PMID: 23144412 Free PMC article.
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks.
Roume H, Heintz-Buschart A, Muller EEL, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, Gillece JD, Hicks ND, Engelthaler DM, Sauter T, Keim PS, Moritz RL, Wilmes P. Roume H, et al. Among authors: schupp jm. NPJ Biofilms Microbiomes. 2015 Jun 17;1:15007. doi: 10.1038/npjbiofilms.2015.7. eCollection 2015. NPJ Biofilms Microbiomes. 2015. PMID: 28721231 Free PMC article.
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance.
Herold M, Martínez Arbas S, Narayanasamy S, Sheik AR, Kleine-Borgmann LAK, Lebrun LA, Kunath BJ, Roume H, Bessarab I, Williams RBH, Gillece JD, Schupp JM, Keim PS, Jäger C, Hoopmann MR, Moritz RL, Ye Y, Li S, Tang H, Heintz-Buschart A, May P, Muller EEL, Laczny CC, Wilmes P. Herold M, et al. Among authors: schupp jm. Nat Commun. 2020 Oct 19;11(1):5281. doi: 10.1038/s41467-020-19006-2. Nat Commun. 2020. PMID: 33077707 Free PMC article.
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.
Martínez Arbas S, Narayanasamy S, Herold M, Lebrun LA, Hoopmann MR, Li S, Lam TJ, Kunath BJ, Hicks ND, Liu CM, Price LB, Laczny CC, Gillece JD, Schupp JM, Keim PS, Moritz RL, Faust K, Tang H, Ye Y, Skupin A, May P, Muller EEL, Wilmes P. Martínez Arbas S, et al. Among authors: schupp jm. Nat Microbiol. 2021 Jan;6(1):123-135. doi: 10.1038/s41564-020-00794-8. Epub 2020 Nov 2. Nat Microbiol. 2021. PMID: 33139880 Free PMC article.
Real-time PCR assays for genotyping of Cryptococcus gattii in North America.
Kelley EJ, Driebe EM, Etienne K, Brandt ME, Schupp JM, Gillece JD, Trujillo JS, Lockhart SR, Deak E, Keim PS, Engelthaler DM. Kelley EJ, et al. Among authors: schupp jm. BMC Microbiol. 2014 May 13;14:125. doi: 10.1186/1471-2180-14-125. BMC Microbiol. 2014. PMID: 24886039 Free PMC article.
81 results