Zunder ER - Search Results

1

Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm.

Zunder ER, Finck R, Behbehani GK, Amir el-AD, Krishnaswamy S, Gonzalez VD, Lorang CG, Bjornson Z, Spitzer MH, Bodenmiller B, Fantl WJ, Pe'er D, Nolan GP. Zunder ER, et al. Nat Protoc. 2015 Feb;10(2):316-33. doi: 10.1038/nprot.2015.020. Epub 2015 Jan 22. Nat Protoc. 2015. PMID: 25612231 Free PMC article.

2

A hyperparameter-randomized ensemble approach for robust clustering across diverse datasets.

Goggin SM, Zunder ER. Goggin SM, et al. Among authors: zunder er. bioRxiv [Preprint]. 2023 Dec 19:2023.12.18.571953. doi: 10.1101/2023.12.18.571953. bioRxiv. 2023. Update in: Genome Biol. 2024 Sep 16;25(1):242. doi: 10.1186/s13059-024-03386-5 PMID: 38187667 Free PMC article. Updated. Preprint.

3

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators.

Bodenmiller B, Zunder ER, Finck R, Chen TJ, Savig ES, Bruggner RV, Simonds EF, Bendall SC, Sachs K, Krutzik PO, Nolan GP. Bodenmiller B, et al. Among authors: zunder er. Nat Biotechnol. 2012 Sep;30(9):858-67. doi: 10.1038/nbt.2317. Nat Biotechnol. 2012. PMID: 22902532 Free PMC article.

4

Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining.

Behbehani GK, Thom C, Zunder ER, Finck R, Gaudilliere B, Fragiadakis GK, Fantl WJ, Nolan GP. Behbehani GK, et al. Among authors: zunder er. Cytometry A. 2014 Dec;85(12):1011-9. doi: 10.1002/cyto.a.22573. Epub 2014 Oct 1. Cytometry A. 2014. PMID: 25274027 Free PMC article.

5

A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry.

Zunder ER, Lujan E, Goltsev Y, Wernig M, Nolan GP. Zunder ER, et al. Cell Stem Cell. 2015 Mar 5;16(3):323-37. doi: 10.1016/j.stem.2015.01.015. Cell Stem Cell. 2015. PMID: 25748935 Free PMC article.

6

Early reprogramming regulators identified by prospective isolation and mass cytometry.

Lujan E, Zunder ER, Ng YH, Goronzy IN, Nolan GP, Wernig M. Lujan E, et al. Among authors: zunder er. Nature. 2015 May 21;521(7552):352-6. doi: 10.1038/nature14274. Epub 2015 Apr 1. Nature. 2015. PMID: 25830878 Free PMC article.

7

Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.

Levine JH, Simonds EF, Bendall SC, Davis KL, Amir el-AD, Tadmor MD, Litvin O, Fienberg HG, Jager A, Zunder ER, Finck R, Gedman AL, Radtke I, Downing JR, Pe'er D, Nolan GP. Levine JH, et al. Among authors: zunder er. Cell. 2015 Jul 2;162(1):184-97. doi: 10.1016/j.cell.2015.05.047. Epub 2015 Jun 18. Cell. 2015. PMID: 26095251 Free PMC article.

8

IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system.

Spitzer MH, Gherardini PF, Fragiadakis GK, Bhattacharya N, Yuan RT, Hotson AN, Finck R, Carmi Y, Zunder ER, Fantl WJ, Bendall SC, Engleman EG, Nolan GP. Spitzer MH, et al. Among authors: zunder er. Science. 2015 Jul 10;349(6244):1259425. doi: 10.1126/science.1259425. Science. 2015. PMID: 26160952 Free PMC article.

9

Highly multiplexed simultaneous detection of RNAs and proteins in single cells.

Frei AP, Bava FA, Zunder ER, Hsieh EW, Chen SY, Nolan GP, Gherardini PF. Frei AP, et al. Among authors: zunder er. Nat Methods. 2016 Mar;13(3):269-75. doi: 10.1038/nmeth.3742. Epub 2016 Jan 25. Nat Methods. 2016. PMID: 26808670 Free PMC article.

10

AN UPDATED DEBARCODING TOOL FOR MASS CYTOMETRY WITH CELL TYPE-SPECIFIC AND CELL SAMPLE-SPECIFIC STRINGENCY ADJUSTMENT.

Fread KI, Strickland WD, Nolan GP, Zunder ER. Fread KI, et al. Among authors: zunder er. Pac Symp Biocomput. 2017;22:588-598. doi: 10.1142/9789813207813_0054. Pac Symp Biocomput. 2017. PMID: 27897009 Free article.

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