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Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: hahne f. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
flowCore: a Bioconductor package for high throughput flow cytometry.
Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R. Hahne F, et al. BMC Bioinformatics. 2009 Apr 9;10:106. doi: 10.1186/1471-2105-10-106. BMC Bioinformatics. 2009. PMID: 19358741 Free PMC article.
Per-channel basis normalization methods for flow cytometry data.
Hahne F, Khodabakhshi AH, Bashashati A, Wong CJ, Gascoyne RD, Weng AP, Seyfert-Margolis V, Bourcier K, Asare A, Lumley T, Gentleman R, Brinkman RR. Hahne F, et al. Cytometry A. 2010 Feb;77(2):121-31. doi: 10.1002/cyto.a.20823. Cytometry A. 2010. PMID: 19899135 Free PMC article.
The LIFEdb database in 2006.
Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S. Mehrle A, et al. Among authors: hahne f. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D415-8. doi: 10.1093/nar/gkj139. Nucleic Acids Res. 2006. PMID: 16381901 Free PMC article.
Functional profiling: from microarrays via cell-based assays to novel tumor relevant modulators of the cell cycle.
Arlt D, Huber W, Liebel U, Schmidt C, Majety M, Sauermann M, Rosenfelder H, Bechtel S, Mehrle A, Bannasch D, Schupp I, Seiler M, Simpson JC, Hahne F, Moosmayer P, Ruschhaupt M, Guilleaume B, Wellenreuther R, Pepperkok R, Sültmann H, Poustka A, Wiemann S. Arlt D, et al. Among authors: hahne f. Cancer Res. 2005 Sep 1;65(17):7733-42. doi: 10.1158/0008-5472.CAN-05-0642. Cancer Res. 2005. PMID: 16140941
37 results