Aerssens J - Search Results

1

ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering.

Verbist B, Clement L, Reumers J, Thys K, Vapirev A, Talloen W, Wetzels Y, Meys J, Aerssens J, Bijnens L, Thas O. Verbist B, et al. Among authors: aerssens j. BMC Bioinformatics. 2015 Feb 22;16:59. doi: 10.1186/s12859-015-0458-7. BMC Bioinformatics. 2015. PMID: 25887734 Free PMC article.

2

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.

Verbist BM, Thys K, Reumers J, Wetzels Y, Van der Borght K, Talloen W, Aerssens J, Clement L, Thas O. Verbist BM, et al. Among authors: aerssens j. Bioinformatics. 2015 Jan 1;31(1):94-101. doi: 10.1093/bioinformatics/btu587. Epub 2014 Aug 31. Bioinformatics. 2015. PMID: 25178459

3

Performance assessment of the Illumina massively parallel sequencing platform for deep sequencing analysis of viral minority variants.

Thys K, Verhasselt P, Reumers J, Verbist BM, Maes B, Aerssens J. Thys K, et al. Among authors: aerssens j. J Virol Methods. 2015 Sep 1;221:29-38. doi: 10.1016/j.jviromet.2015.04.022. Epub 2015 Apr 25. J Virol Methods. 2015. PMID: 25917877

4

QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles.

Van der Borght K, Thys K, Wetzels Y, Clement L, Verbist B, Reumers J, van Vlijmen H, Aerssens J. Van der Borght K, et al. Among authors: aerssens j. BMC Bioinformatics. 2015 Nov 10;16:379. doi: 10.1186/s12859-015-0812-9. BMC Bioinformatics. 2015. PMID: 26554718 Free PMC article.

5

Data mining of public SNP databases for the selection of intragenic SNPs.

Aerts J, Wetzels Y, Cohen N, Aerssens J. Aerts J, et al. Among authors: aerssens j. Hum Mutat. 2002 Sep;20(3):162-73. doi: 10.1002/humu.10107. Hum Mutat. 2002. PMID: 12203988

6

Ultra-deep sequencing of HIV-1 reverse transcriptase before start of an NNRTI-based regimen in treatment-naive patients.

Messiaen P, Verhofstede C, Vandenbroucke I, Dinakis S, Van Eygen V, Thys K, Winters B, Aerssens J, Vogelaers D, Stuyver LJ, Vandekerckhove L. Messiaen P, et al. Among authors: aerssens j. Virology. 2012 Apr 25;426(1):7-11. doi: 10.1016/j.virol.2012.01.002. Epub 2012 Feb 4. Virology. 2012. PMID: 22305619 Free article.

7

Deep-sequencing analysis of the gene encoding the hepatitis C virus nonstructural 3-4A protease confirms a low prevalence of telaprevir-resistant variants at baseline and the end of the REALIZE study.

Dierynck I, Thys K, Ghys A, Sullivan JC, Kieffer TL, Aerssens J, Picchio G, De Meyer S. Dierynck I, et al. Among authors: aerssens j. J Infect Dis. 2014 Dec 15;210(12):1871-80. doi: 10.1093/infdis/jiu340. Epub 2014 Jun 18. J Infect Dis. 2014. PMID: 24943725 Clinical Trial.

8

Deep sequencing analysis of HIV-1 reverse transcriptase at baseline and time of failure in patients receiving rilpivirine in the phase III studies ECHO and THRIVE.

Van Eygen V, Thys K, Van Hove C, Rimsky LT, De Meyer S, Aerssens J, Picchio G, Vingerhoets J. Van Eygen V, et al. Among authors: aerssens j. J Med Virol. 2016 May;88(5):798-806. doi: 10.1002/jmv.24395. Epub 2015 Oct 5. J Med Virol. 2016. PMID: 26412111

9

Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications.

Vandenbroucke I, Van Marck H, Verhasselt P, Thys K, Mostmans W, Dumont S, Van Eygen V, Coen K, Tuefferd M, Aerssens J. Vandenbroucke I, et al. Among authors: aerssens j. Biotechniques. 2011 Sep;51(3):167-77. doi: 10.2144/000113733. Biotechniques. 2011. PMID: 21906038 Free article.

10

A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates.

Sijmons S, Thys K, Corthout M, Van Damme E, Van Loock M, Bollen S, Baguet S, Aerssens J, Van Ranst M, Maes P. Sijmons S, et al. Among authors: aerssens j. PLoS One. 2014 Apr 22;9(4):e95501. doi: 10.1371/journal.pone.0095501. eCollection 2014. PLoS One. 2014. PMID: 24755734 Free PMC article.

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